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Sedimentary ancient DNA (sedaDNA) is continuing to revolutionise our understanding of past biological and geological processes by retrieving and analysing the ancient DNA preserved in lake, cave, open terrestrial, midden, permafrozen, and marine environments (Crump 2021). The study of sedaDNA began in the late 1990s (Coolen and Overmann 1998) with the first reports of extinct animal sedaDNA in 2003 (Hofreiter et al. 2003; Willerslev et al. 2003). Since then, it has been shown that sedaDNA can be recovered at high resolution from recent (101–102 year-old) (e.g., Capo et al. 2017) through to deep-time (105–106 year-old) sediments from a vast diversity of environments (Crump et al. 2021; Zavala et al. 2021; Armbrecht et al. 2022; Kjær et al. 2022). Unlike traditional palaeoenvironmental and palaeoecological proxies, sedaDNA is unique in that it is derived from any type of organism that was present in the local area and that may contain population-level information. This latter characteristic means that, unlike any other comparable proxy, sedaDNA can be used for evolutionary analyses (Gelabert et al. 2021; Lammers et al. 2021; Pedersen et al. 2021; Vernot et al. 2021).

Late Pliocene and Early Pleistocene epochs 3.6 to 0.8 million years ago¹ had climates resembling those forecasted under future warming². Palaeoclimatic records show strong polar amplification with mean annual temperatures of 11-19 °C above contemporary values^3,4. The biological communities inhabiting the Arctic during this time remain poorly known because fossils are rare⁵. Here we report an ancient environmental DNA⁶ (eDNA) record describing the rich plant and animal assemblages of the Kap København Formation in North Greenland, dated to around two million years ago. The record shows an open boreal forest ecosystem with mixed vegetation of poplar, birch and thuja trees, as well as a variety of Arctic and boreal shrubs and herbs, many of which had not previously been detected at the site from macrofossil and pollen records. The DNA record confirms the presence of hare and mitochondrial DNA from animals including mastodons, reindeer, rodents and geese, all ancestral to their present-day and late Pleistocene relatives. The presence of marine species including horseshoe crab and green algae support a warmer climate than today. The reconstructed ecosystem has no modern analogue. The survival of such ancient eDNA probably relates to its binding to mineral surfaces. Our findings open new areas of genetic research, demonstrating that it is possible to track the ecology and evolution of biological communities from two million years ago using ancient eDNA.

In the Northern Hemisphere, an insolation driven Early to Middle Holocene Thermal Maximum was followed by a Neoglacial cooling that culminated during the Little Ice Age (LIA). Here, we review the glacier response to this Neoglacial cooling in Greenland. Changes in the ice margins of outlet glaciers from the Greenland Ice Sheet as well as local glaciers and ice caps are synthesized Greenland-wide. In addition, we compare temperature reconstructions from ice cores, elevation changes of the ice sheet across Greenland and oceanographic reconstructions from marine sediment cores over the past 5,000 years. The data are derived from a comprehensive review of the literature supplemented with unpublished reports. Our review provides a synthesis of the sensitivity of the Greenland ice margins and their variability, which is critical to understanding how Neoglacial glacier activity was interrupted by the current anthropogenic warming. We have reconstructed three distinct periods of glacier expansion from our compilation: two older Neoglacial advances at 2,500 – 1,700 yrs. BP (Before Present = 1950 CE, Common Era) and 1,250 – 950 yrs. BP; followed by a general advance during the younger Neoglacial between 700-50 yrs. BP, which represents the LIA. There is still insufficient data to outline the detailed spatio-temporal relationships between these periods of glacier expansion. Many glaciers advanced early in the Neoglacial and persisted in close proximity to their present-day position until the end of the LIA. Thus, the LIA response to Northern Hemisphere cooling must be seen within the wider context of the entire Neoglacial period of the past 5,000 years. Ice expansion appears to be closely linked to changes in ice sheet elevation, accumulation, and temperature as well as surface-water cooling in the surrounding oceans. At least for the two youngest Neoglacial advances, volcanic forcing triggering a sea-ice /ocean feedback, could explain their initiation. There are probably several LIA glacier fluctuations since the first culmination close to 1250 CE (Common Era) and available data suggests ice culminations in the 1400s, early to mid-1700s and early to mid-1800s CE. The last LIA maxima lasted until the present deglaciation commenced around 50 yrs. BP (1900 CE). The constraints provided here on the timing and magnitude of LIA glacier fluctuations delivers a more realistic background validation for modelling future ice sheet stability.

During the mid-Pliocene (Zanclean, ca. ∼ 3.9 Ma), parts of the Canadian High Arctic experienced mean annual temperatures that were 14–22°C warmer than today and supported diverse boreal-type forests. The landscapes of this vegetated polar region left behind a fragmented sedimentary record that crops out across several islands in the Canadian Arctic Archipelago as the Beaufort Formation and correlative strata. Paleoecological information from these strata provides a high-fidelity window onto Pliocene environments, and prominent fossil sites yield unparalleled insights into Cenozoic mammal evolution. Significantly, many of the strata reveal evidence for life-sediment interactions in a warm-climate Arctic, most notably in the form of extensive woody debris and phytoclast deposits. This paper presents original field data that refines the sedimentological context of plant debris accumulations from the anactualistic High Arctic forests, most notably at the ‘Fyles Leaf Beds' and ‘Beaver Pond' fossil-bearing sites in the ‘high terrace deposits' of central Ellesmere Island. The former is a remarkably well-preserved, leaf-rich deposit that is part of a complex of facies associations representing lacustrine, fluvio-deltaic and mire deposition above a paleotopographic unconformity. The latter yields tooth-marked woody debris within a peat layer that also contains a rich assemblage of vertebrate and plant fossils including abundant remains from the extinct beaver-group Dipoides. Here we present sedimentological data that provide circumstantial evidence that the woody debris deposit at Beaver Pond could record dam-building in the genus, by comparing the facies motif with new data from known Holocene beaver dam facies in England. Across the Pliocene of the High Arctic region, woody debris accumulations are shown to represent an array of biosedimentary deposits and landforms including mires, driftcretions, woody bedforms, and possible beaver dams, which help to contextualize mammal fossil sites, provide facies models for high-latitude forests, and reveal interactions between life and sedimentation in a vanished world that may be an analogue to that of the near-future.

Understanding patterns of colonisation is important for explaining both the distribution of single species and anticipating how ecosystems may respond to global warming. Insular flora may be especially vulnerable because oceans represent severe dispersal barriers. Here we analyse two lake sediment cores from Iceland for ancient sedimentary DNA to infer patterns of colonisation and Holocene vegetation development. Our cores from lakes Torfdalsvatn and Nykurvatn span the last c. 12,000 cal yr BP and c. 8600 cal yr BP, respectively. With near-centennial resolution, we identified a total of 191 plant taxa, with 152 taxa identified in the sedimentary record of Torfdalsvatn and 172 plant taxa in the sedimentary record of Nykurvatn. The terrestrial vegetation at Torfdalsvatn was initially dominated by bryophytes, arctic herbs such as Saxifraga spp. and grasses. Around 10,100 cal yr BP, a massive immigration of new taxa was observed, and shrubs and dwarf shrubs became common whereas aquatic macrophytes became dominant. At Nykurvatn, the dominant taxa were all present in the earliest samples; shrubs and dwarf shrubs were more abundant at this site than at Torfdalsvatn. There was an overall steep increase both in the local accumulated richness and regional species pool until 8000 cal yr BP, by which time ¾ of all taxa identified had arrived. The period 4500-1000 cal yr BP witnessed the appearance of a a small number of bryophytes, graminoids and forbs that were not recorded in earlier samples. The last millennium, after human settlement of the island (Landnám), is characterised by a sudden disappearance of Juniperus communis, but also reappearance of some high arctic forbs and dwarf shrubs. Notable immigration during the Holocene coincides with periods of increased incidence of sea ice, and we hypothesise that this may have acted as a dispersal vector. Thus, although ongoing climate change might provide a suitable habitat in Iceland for a large range of species only found in the neighbouring regions today, the reduction of sea ice may in fact limit the natural colonisation of new plant species.

During the last glacial-interglacial cycle, Arctic biotas experienced substantial climatic changes, yet the nature, extent and rate of their responses are not fully understood^1-8. Here we report a large-scale environmental DNA metagenomic study of ancient plant and mammal communities, analysing 535 permafrost and lake sediment samples from across the Arctic spanning the past 50,000 years. Furthermore, we present 1,541 contemporary plant genome assemblies that were generated as reference sequences. Our study provides several insights into the long-term dynamics of the Arctic biota at the circumpolar and regional scales. Our key findings include: (1) a relatively homogeneous steppe-tundra flora dominated the Arctic during the Last Glacial Maximum, followed by regional divergence of vegetation during the Holocene epoch; (2) certain grazing animals consistently co-occurred in space and time; (3) humans appear to have been a minor factor in driving animal distributions; (4) higher effective precipitation, as well as an increase in the proportion of wetland plants, show negative effects on animal diversity; (5) the persistence of the steppe-tundra vegetation in northern Siberia enabled the late survival of several now-extinct megafauna species, including the woolly mammoth until 3.9 ± 0.2 thousand years ago (ka) and the woolly rhinoceros until 9.8 ± 0.2 ka; and (6) phylogenetic analysis of mammoth environmental DNA reveals a previously unsampled mitochondrial lineage. Our findings highlight the power of ancient environmental metagenomics analyses to advance understanding of population histories and long-term ecological dynamics.

Arctic hotspots, local areas of high biodiversity, are potential key sites for conservation of Arctic biodiversity. However, there is a need for improved understanding of their long-term resilience. The Arctic hotspot of Ringhorndalen has the highest registered diversity of vascular plants in the Svalbard archipelago, including several remarkable and isolated plant populations located far north of their normal distribution range. Here we analyze a lake sediment core from Ringhorndalen for sedimentary ancient DNA (sedaDNA) and geochemical proxies to detect changes in local vegetation and climate. Half of the plant taxa appeared already before 10,600 cal. yr BP, indicating rapid colonization as the ice retreated. Thermophilous species had a reoccurring presence throughout the Holocene record, but stronger signal in the early than Late Holocene period. Thus, thermophilous Arctic plant species had broader distribution ranges during the Early Holocene thermal maximum c. 10,000 cal. yr BP than today. Most of these thermophilous species are currently not recorded in the catchment area of the studied lake, but occur locally in favourable areas further into the valley. For example, Empetrum nigrum was found in >40% of the sedaDNA samples, whereas its current distribution in Ringhorndalen is highly restricted and outside the catchment area of the lake. Our findings support the hypothesis of isolated relict populations in Ringhorndalen. The findings are also consistent with main Holocene climatic shifts in Svalbard identified by previous studies and indicate an early warm and species-rich postglacial period until c. 6500 cal. yr BP, followed by fluctuating cool and warm periods throughout the later Holocene. 

Sediment cores from Kløverbladvatna, a threshold lake in Wahlenbergfjorden, Nordaustlandet, Svalbard were used to reconstruct Holocene glacier fluctuations. Meltwater from Etonbreen spills over a threshold to the lake, only when the glacier is significantly larger than at present. Lithological logging, loss-on-ignition, ITRAX scanning and radiocarbon dating of the cores show that Kløverbladvatna became isolated from Wahlenbergfjorden c. 5.4 cal. kyr BP due to glacioisostatic rebound. During the Late Holocene, laminated clayey gyttja from lacustrine organic production and surface runoff from the catchment accumulated in the lake. The lacustrine sedimentary record suggests that meltwater only spilled over the threshold at the peak of the surge of Etonbreen in AD 1938. Hence, we suggest that this was the largest extent of Etonbreen in the (mid-late) Holocene. In Palanderbukta, a tributary fjord to Wahlenbergfjorden, raised beaches were surveyed and organic material collected to determine the age of the beaches and reconstruct postglacial relative sea level change. The age of the postglacial raised beaches ranges from 10.7 cal. kyr BP at 50 m a.s.l. to 3.13 cal. kyr BP at 2 m a.s.l. The reconstructed postglacial relative sea level curve adds valuable spatial and chronological data to the relative sea level record of Nordaustlandet.

Evaporative flux from soils in arid and semi-arid climates can be very high and may substantially reduce soil moisture retained between infrequent rainfall events. Direct measurement of the evaporative losses from soils is technically challenging. However, environmental tracers such as water stable hydrogen and oxygen isotope composition can be used to calculate evaporation rates if the initial signature of the infiltrating rainwater is distinct from the signature of residual soil moisture. Large tropical cyclones typically result in rainfall events of large volume and very negative δ18O signatures that are significantly lower than the signatures of more frequent and smaller rainfall events. These very negative stable isotope signatures are retained in the soil and can be used to understand the depth of water infiltration, retention and subsequent rate of evaporation from the soil. At our study site in dry subtropical northwest Australia, we repeatedly sampled rainwater and soil moisture prior to, during and after tropical Cyclones Heidi and Lua in 2012. Site inundation from Cyclone Heidi (rainfall 213 mm, δ18O −17.6‰) replenished soil moisture in the unsaturated zone for several months, completely replacing soil moisture down to depths of ~3.5 m and contributing to groundwater recharge. The transient momentary evaporative losses from wet soil at the time of sampling varied between 0.21 and 0.60 mm × day−1 (equivalent to 76 to 220 mm × yr−1 recalculated as an annual rate). During the prolonged dry period between cyclones, evaporative losses decreased to between 8 and 30 mm × yr−1. Mean long-term groundwater recharge for the study site was low (<6 mm × yr−1). Recharge is primarily driven by infrequent but high-volume cyclones that are an important source of soil moisture and an essential water source for vegetation in this semi-arid environment. However, variation in lithology, position in the landscape and time since the last inundation contribute to highly heterogeneous patterns of δ18O in the vadose zone, which complicates upscaling observations from a local to a regional scale model of evaporative demand.