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Publications (5 of 5) Show all publications
Awoyomi, O. F., Gorospe, C. M., Das, B., Mishra, P., Sharma, S., Diachenko, O., . . . Chabes, A. (2025). RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis. Proceedings of the National Academy of Sciences of the United States of America, 122(16), Article ID e2503531122.
Open this publication in new window or tab >>RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis
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2025 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 122, no 16, article id e2503531122Article in journal (Refereed) Published
Abstract [en]

Mitochondrial DNA (mtDNA) replication requires a steady supply of deoxyribonucleotides (dNTPs), synthesized de novo by ribonucleotide reductase (RNR). In nondividing cells, RNR consists of RRM1 and RRM2B subunits. Mutations in RRM2B cause mtDNA depletion syndrome, linked to muscle weakness, neurological decline, and early mortality. The impact of RRM2B deficiency on dNTP pools in nondividing tissues remains unclear. Using a mouse knockout model, we demonstrate that RRM2B deficiency selectively depletes dATP and dGTP, while dCTP and dTTP levels remain stable or increase. This depletion pattern resembles the effects of hydroxyurea, an inhibitor that reduces overall RNR activity. Mechanistically, we propose that the depletion of dATP and dGTP arises from their preferred degradation by the dNTPase SAMHD1 and the lower production rate of dATP by RNR. Identifying dATP and dGTP depletion as a hallmark of RRM2B deficiency provides insights for developing nucleoside bypass therapies to alleviate the effects of RRM2B mutations.

Place, publisher, year, edition, pages
Proceedings of the National Academy of Sciences (PNAS), 2025
Keywords
ribonucleotide reductase, dNTP metabolism, mtDNA stability, genome stability
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-238192 (URN)10.1073/pnas.2503531122 (DOI)40244665 (PubMedID)2-s2.0-105003415251 (Scopus ID)
Funder
Swedish Research Council, 2022-00675Swedish Research Council, 2024-03261Swedish Cancer Society, 22 2377 PjSwedish Cancer Society, 22 2381 PjKnut and Alice Wallenberg Foundation, KAW 2021.0053
Available from: 2025-04-26 Created: 2025-04-26 Last updated: 2025-05-26Bibliographically approved
de Jaime-Soguero, A., Hattemer, J., Bufe, A., Haas, A., van den Berg, J., van Batenburg, V., . . . Acebrón, S. P. (2024). Developmental signals control chromosome segregation fidelity during pluripotency and neurogenesis by modulating replicative stress. Nature Communications, 15(1), Article ID 7404.
Open this publication in new window or tab >>Developmental signals control chromosome segregation fidelity during pluripotency and neurogenesis by modulating replicative stress
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2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, no 1, article id 7404Article in journal (Refereed) Published
Abstract [en]

Human development relies on the correct replication, maintenance and segregation of our genetic blueprints. How these processes are monitored across embryonic lineages, and why genomic mosaicism varies during development remain unknown. Using pluripotent stem cells, we identify that several patterning signals—including WNT, BMP, and FGF—converge into the modulation of DNA replication stress and damage during S-phase, which in turn controls chromosome segregation fidelity in mitosis. We show that the WNT and BMP signals protect from excessive origin firing, DNA damage and chromosome missegregation derived from stalled forks in pluripotency. Cell signalling control of chromosome segregation declines during lineage specification into the three germ layers, but re-emerges in neural progenitors. In particular, we find that the neurogenic factor FGF2 induces DNA replication stress-mediated chromosome missegregation during the onset of neurogenesis, which could provide a rationale for the elevated chromosomal mosaicism of the developing brain. Our results highlight roles for morphogens and cellular identity in genome maintenance that contribute to somatic mosaicism during mammalian development.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Medical Genetics and Genomics
Identifiers
urn:nbn:se:umu:diva-229381 (URN)10.1038/s41467-024-51821-9 (DOI)001299163800001 ()39191776 (PubMedID)2-s2.0-85202346452 (Scopus ID)
Available from: 2024-09-12 Created: 2024-09-12 Last updated: 2025-02-10Bibliographically approved
Das, B., Mishra, P., Pandey, P., Sharma, S. & Chabes, A. (2022). dNTP concentrations do not increase in mammalian cells in response to DNA damage [Letter to the editor]. Cell Metabolism, 34(12), 1895-1896
Open this publication in new window or tab >>dNTP concentrations do not increase in mammalian cells in response to DNA damage
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2022 (English)In: Cell Metabolism, ISSN 1550-4131, E-ISSN 1932-7420, Vol. 34, no 12, p. 1895-1896Article in journal, Letter (Refereed) Published
Place, publisher, year, edition, pages
Elsevier, 2022
National Category
Cell and Molecular Biology Cell Biology
Identifiers
urn:nbn:se:umu:diva-201614 (URN)10.1016/j.cmet.2022.11.002 (DOI)000901818900001 ()36476929 (PubMedID)2-s2.0-85143132439 (Scopus ID)
Available from: 2022-12-14 Created: 2022-12-14 Last updated: 2023-09-05Bibliographically approved
Minz, A. P., Das, B., Mohapatra, D., Suresh, V., Mishra, S. & Senapati, S. (2022). Gemcitabine induces polarization of mouse peritoneal macrophages towards M1-like and confers antitumor property by inducing ROS production. Clinical and Experimental Metastasis, 39, 783-800
Open this publication in new window or tab >>Gemcitabine induces polarization of mouse peritoneal macrophages towards M1-like and confers antitumor property by inducing ROS production
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2022 (English)In: Clinical and Experimental Metastasis, ISSN 0262-0898, E-ISSN 1573-7276, Vol. 39, p. 783-800Article in journal (Refereed) Published
Abstract [en]

In patients with pancreatic cancer (PC), the peritoneal cavity is the second-most common site of metastasis after the liver. Peritoneal macrophages (PMs) have been demonstrated to play a significant role in the peritoneal metastases of different cancers. Gemcitabine (GEM) is known to affect PC-associated immune cells, including macrophages. However, its effect on PMs and its possible clinical implication is yet to be investigated. In this study, mouse-derived PMs were treated with GEM ex vivo to analyze the polarization status. Production of GEM-induced reactive oxygen species (ROS) and reactive nitrogen species was evaluated using DCFH-DA, DAF-FM, and Griess assay. Antitumor effects of PMs on UN-KC-6141and UN-KPC-961 murine PC cells were evaluated in presence and absence of GEM in vitro. Similarly, effect of GEM on human THP-1 macrophage polarization and its tumoricidal effect was studied in vitro. Furthermore, the effect of GEM-treated PMs on peritoneal metastasis of UN-KC-6141 cells was evaluated in a syngeneic mouse model of PC. GEM upregulated M1 phenotype-associated molecular markers (Tnf-α and Inos) in vitro in PMs obtained from naïve mouse. Moreover, IL-4-induced M2-like PMs reverted to M1-like after GEM treatment. Co-culture of UN-KC-6141 and UN-KPC-961 cancer cells with PMs in the presence of GEM increased apoptosis of these cells, whereas cell death was markedly reduced after N-acetyl-l-cysteine treatment. Corroborating these findings co-culture of GEM-treated human THP-1 macrophages also induced cell death in MIAPaCa-2 cancer cells. GEM-treated PMs injected intraperitoneally along with UN-KC-6141 cells into mice extended survival period, but did not stop disease progression and mortality. Together, GEM induced M1-like polarization of PMs from naive and/or M2-polarized PMs in a ROS-dependent manner. GEM-induced M1-like PMs prompted cytotoxicity in PC cells and delayed disease progression in vivo. 

Place, publisher, year, edition, pages
Springer, 2022
Keywords
NF-κB signaling, Peritoneal cavity, Pro-inflammatory, Spheroids, Transcoelomic metastasis
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
urn:nbn:se:umu:diva-198310 (URN)10.1007/s10585-022-10178-3 (DOI)000825929100001 ()35838814 (PubMedID)2-s2.0-85134324901 (Scopus ID)
Available from: 2022-07-28 Created: 2022-07-28 Last updated: 2022-11-29Bibliographically approved
Dash, T. K., Patra, D., Venu, P., Das, B., Bhattacharyya, R. & Shunmugam, R. (2021). Hetero-trifunctional malonate-based nanotheranostic system for targeted breast cancer therapy. ACS Applied Bio Materials, 4(6), 5251-5265
Open this publication in new window or tab >>Hetero-trifunctional malonate-based nanotheranostic system for targeted breast cancer therapy
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2021 (English)In: ACS Applied Bio Materials, E-ISSN 2576-6422, Vol. 4, no 6, p. 5251-5265Article in journal (Refereed) Published
Abstract [en]

Designing multifunctional linkers is crucial for tricomponent theranostic targeted nanomedicine development as they are essential to enrich polymeric systems with different functional moieties. Herein, we have obtained a hetero-trifunctional linker from malonic acid and demonstrated its implication as an amphiphilic targeted nanotheranostic system (CB DX UN PG FL). We synthesized it with varying hydrophilic segment to fine-tune the hydrophobic/hydrophilic ratio to optimize its self-assembly. pH-responsive hydrazone-linked doxorubicin was conjugated to the backbone (UN PG FL) containing folate as a targeting ligand. Cobalt carbonyl complex was used for T-2-weighted magnetic resonance imaging (MRI). Electron micrographs of optimized molecule CB DX UN PG((4 kDa)) FL in an aqueous system have demonstrated about 50-60 nm-sized uniform micelles. The relaxivity study and the one-dimensional (1D) imaging experiments dearly revealed the effect of the nanotheranostics system on transverse relaxation (T-2) of water molecules, which validated the system as a T-2-weighted MRI contrast agent. The detailed in vitro biological studies validated the targeted delivery and anticancer potential of CB DX UN PG((4 kDa)) FL. Combining the data on transverse relaxation, folate mediated uptake, and anticancer activity, the designed molecule will have a significant impact on the development of targeted theranostic.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2021
Keywords
hetero-trifunctional, T-2 weighted MRI, targeted nanotheranostic, NMR 1D imaging, malonic acid
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:umu:diva-191648 (URN)10.1021/acsabm.1c00407 (DOI)000664594300056 ()35007007 (PubMedID)2-s2.0-85108713028 (Scopus ID)
Available from: 2022-01-21 Created: 2022-01-21 Last updated: 2024-08-21Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-5657-5626

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