umu.sePublikasjoner
Endre søk
RefereraExporteraLink to record
Permanent link

Direct link
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annet format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annet språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Institutionen för ekologi, miljö och geovetenskap. Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Umeå Plant Science Centre (UPSC). Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway.ORCID-id: 0000-0002-3793-3264
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Umeå Plant Science Centre (UPSC). Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Institutionen för fysiologisk botanik.
Vise andre og tillknytning
2018 (engelsk)Inngår i: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 115, nr 46, s. E10970-E10978Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

The Populus genus is one of the major plant model systems, but genomic resources have thus far primarily been available for poplar species, and primarily Populus trichocarpa (Torr. & Gray), which was the first tree with a whole-genome assembly. To further advance evolutionary and functional genomic analyses in Populus, we produced genome assemblies and population genetics resources of two aspen species, Populus tremula L. and Populus tremuloides Michx. The two aspen species have distributions spanning the Northern Hemisphere, where they are keystone species supporting a wide variety of dependent communities and produce a diverse array of secondary metabolites. Our analyses show that the two aspens share a similar genome structure and a highly conserved gene content with P. trichocarpa but display substantially higher levels of heterozygosity. Based on population resequencing data, we observed widespread positive and negative selection acting on both coding and noncoding regions. Furthermore, patterns of genetic diversity and molecular evolution in aspen are influenced by a number of features, such as expression level, coexpression network connectivity, and regulatory variation. To maximize the community utility of these resources, we have integrated all presented data within the PopGenIE web resource (PopGenIE.org).

sted, utgiver, år, opplag, sider
NATL ACAD SCIENCES , 2018. Vol. 115, nr 46, s. E10970-E10978
Emneord [en]
genome assembly, natural selection, coexpression, population genetics, Populus
HSV kategori
Identifikatorer
URN: urn:nbn:se:umu:diva-154950DOI: 10.1073/pnas.1801437115ISI: 000449934400020PubMedID: 30373829Scopus ID: 2-s2.0-85056516875OAI: oai:DiVA.org:umu-154950DiVA, id: diva2:1275944
Tilgjengelig fra: 2019-01-07 Laget: 2019-01-07 Sist oppdatert: 2019-01-07bibliografisk kontrollert

Open Access i DiVA

fulltext(1405 kB)104 nedlastinger
Filinformasjon
Fil FULLTEXT01.pdfFilstørrelse 1405 kBChecksum SHA-512
dc2368e670123782c48b13ee1cbda0cb6ff895ccb8af27c4983048c66464f800558aee8d3111c90cc9f6e88f4abcec34192e48bb38d3296db43eacd39d2b008b
Type fulltextMimetype application/pdf

Andre lenker

Forlagets fulltekstPubMedScopus

Personposter BETA

Wang, JingSchiffthaler, BastianHvidsten, Torgeir R.de la Torre, AmandaScofield, Douglas G.Mannapperuma, ChanakaRobinson, Kathryn M.Mähler, NiklasJansson, StefanIngvarsson, Pär K.Street, Nathaniel R.

Søk i DiVA

Av forfatter/redaktør
Lin, Yao-ChengWang, JingSchiffthaler, BastianZuccolo, AndreaHvidsten, Torgeir R.de la Torre, AmandaScofield, Douglas G.Mannapperuma, ChanakaRobinson, Kathryn M.Mähler, NiklasJansson, StefanIngvarsson, Pär K.Street, Nathaniel R.
Av organisasjonen
I samme tidsskrift
Proceedings of the National Academy of Sciences of the United States of America

Søk utenfor DiVA

GoogleGoogle Scholar
Totalt: 104 nedlastinger
Antall nedlastinger er summen av alle nedlastinger av alle fulltekster. Det kan for eksempel være tidligere versjoner som er ikke lenger tilgjengelige

doi
pubmed
urn-nbn

Altmetric

doi
pubmed
urn-nbn
Totalt: 256 treff
RefereraExporteraLink to record
Permanent link

Direct link
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annet format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annet språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf