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A unique arginine cluster in PolDIP2 enhances nucleotide binding and DNA synthesis by PrimPol
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
Centro de Biologia Molecular Severo Ochoa, Madrid, Spain.
Centro de Biologia Molecular Severo Ochoa, Madrid, Spain.
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2021 (English)In: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 49, no 4, p. 2179-2191Article in journal (Refereed) Published
Abstract [en]

Replication forks often stall at damaged DNA. To overcome these obstructions and complete the DNA duplication in a timely fashion, replication can be restarted downstream of the DNA lesion. In mammalian cells, this repriming of replication can be achieved through the activities of primase and polymerase PrimPol. PrimPol is stimulated in DNA synthesis through interaction with PolDIP2, however the exact mechanism of this PolDIP2-dependent stimulation is still unclear. Here, we show that PrimPol uses a flexible loop to interact with the C-terminal ApaG-like domain of PolDIP2, and that this contact is essential for PrimPol's enhanced processivity. PolDIP2 increases primer-template and dNTP binding affinities of PrimPol, which concomitantly enhances its nucleotide incorporation efficiency. This stimulation is dependent on a unique arginine cluster in PolDIP2. Since the polymerase activity of PrimPol alone is very limited, this mechanism, where the affinity for dNTPs gets increased by PolDIP2 binding, might be critical for the in vivo function of PrimPol in tolerating DNA lesions at physiological nucleotide concentrations.

Place, publisher, year, edition, pages
Oxford University Press, 2021. Vol. 49, no 4, p. 2179-2191
National Category
Biochemistry Molecular Biology Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
URN: urn:nbn:se:umu:diva-181802DOI: 10.1093/nar/gkab049ISI: 000637321900030Scopus ID: 2-s2.0-85102403658OAI: oai:DiVA.org:umu-181802DiVA, id: diva2:1540887
Funder
Knut and Alice Wallenberg FoundationSwedish Research CouncilThe Kempe FoundationsAvailable from: 2021-03-30 Created: 2021-03-30 Last updated: 2025-02-20Bibliographically approved

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Kasho, KazutoshiStojkovic, GorazdDoimo, MaraLaurent, TimothéeBerner, AndreasWanrooij, Sjoerd

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Kasho, KazutoshiStojkovic, GorazdDoimo, MaraLaurent, TimothéeBerner, AndreasWanrooij, Sjoerd
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Nucleic Acids Research
BiochemistryMolecular BiologyMedical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)

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