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An NMR Tube Filter Reactor for Solid-Phase Synthesis and Gel-Phase 19F-NMR Spectroscopy
Umeå University, Faculty of Science and Technology, Chemistry.
Manuscript (Other academic)
URN: urn:nbn:se:umu:diva-4817OAI: diva2:144062
Available from: 2005-11-16 Created: 2005-11-16 Last updated: 2010-01-13Bibliographically approved
In thesis
1. Glycoconjugates: Solid-phase synthesis and biological applications
Open this publication in new window or tab >>Glycoconjugates: Solid-phase synthesis and biological applications
2005 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Glycoconjugates are biologically important molecules with diverse functions. They consist of carbohydrates of varying size and complexity, attached to a non-sugar moiety as a lipid or a protein. Glycoconjugate structures are often very complex and their intricate biosynthetic pathways makes overexpression difficult. This renders the isolation of pure, structurally defined compounds from natural sources cumbersome. Therefore, to better address questions in glycobiology, synthetic glycoconjugates are an appealing alternative. In addition, synthetic methods allow for the preparation of non-natural glycoconjugates that can enhance the understanding of the influence of structural features on the biological responses.

In this thesis, synthetic methods for the preparation of glycoconjugates, especially glycolipid analogues, have been developed. These methods make use of solid-phase chemistry and are amenable to library synthesis of series of similar compounds. Solid-phase synthesis is a technique where the starting material of the reaction is attached to small plastic beads through a linker. This allows large excess of reagents to speed up the reactions and the sometimes difficult purifications of intermediate products are reduced to simple washings of the beads.

One problem with solid-phase synthesis is the difficulties to monitor the reactions and characterize the intermediate products. Gel-phase 19 F-NMR spectroscopy, using fluorinated linkers and protecting groups, is an excellent tool to overcome this problem and to monitor solid-phase synthesis of e.g. glycoconjugates. Two novel fluorinated linkers for the attachment of carboxylic acids have been developed and are presented in the thesis. These linkers can be cleaved with both acids of varying strengths and nucleophiles like hydroxide ions, and they are stable to glycosylation conditions. In addition, a novel filter reactor for solid-phase synthesis was designed. The reactor fits into an ordinary NMR spectrometer to facilitate the reaction monitoring with gel-phase 19 F-NMR spectroscopy.

The biological applications of the synthesized glycolipids were demonstrated in two different settings. The CD1d restricted binding of glycolipids carrying the monosaccharide α-GalNAc as carbohydrate could be detected on viable cells of mouse origin. CD1d is one of several antigen presenting molecules (the CD1 proteins) that presents lipids and glycolipids to circulating T-cells that in turn can initiate an immune response. The CD1 molecules are relatively sparsely investigated, and the method to measure glycolipid binding on viable cells, as described in the thesis, has the possibility to greatly enhance the knowledge of the structural requirements for CD1-binding.

Serine-based neoglycolipids with terminal carboxylic acids were used to prepare glycoconjugate arrays with covalent bonds to secondary amines on microtiter plates. Carbohydrate arrays have great possibilities to simplify the study of interactions between carbohydrates and e.g. proteins and microbes. The usefulness of the glycolipid arrays constructed in the thesis was illustrated with two lectins, RCA120 from Ricinus communis and BS-1 from Bandeiraea simplicifolia. Both lectins bound to the array of neoglycolipids in agreement with their respective specificity for galactosides.

Glycobiology is a large area of great interest and the methods described in this thesis can be used to answer a variety of glycoconjugaterelated biological questions.

Place, publisher, year, edition, pages
Umeå: Kemi, 2005. 68 p.
Glycoconjugate, Glycolipid, Solid-phase synthesis, Glycosylation, Gel-phase 19F-NMR spectroscopy, Fluorinated linker, Carbohydrat array, CD1
National Category
Organic Chemistry
urn:nbn:se:umu:diva-630 (URN)91-7305-984-6 (ISBN)
Public defence
2005-12-10, 10:00
Available from: 2005-11-16 Created: 2005-11-16 Last updated: 2011-03-10Bibliographically approved

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