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Mapping higher-order dynamics and interactions in complex networks
Umeå University, Faculty of Science and Technology, Department of Physics.ORCID iD: 0000-0001-5859-4073
2023 (English)Doctoral thesis, comprehensive summary (Other academic)Alternative title
Kartläggning av högre ordningens dynamik och interaktioner i komplexa nätverk (Swedish)
Abstract [en]

Complex systems research seeks to explain emergent properties in social, technological, and biological systems that result from interactions between their components. As data on the intricate relationships within these systems become increasingly available, there is a growing need for more sophisticated models to describe them accurately and offer deeper insights.

This thesis addresses challenges in incorporating higher-order interactions and dynamics into the analysis of complex systems that go beyond standard network approaches. It covers mapping changing network organizations, modeling higher-order dynamics on ordinary networks, integrating network structure and metadata, and modeling multibody interactions. The thesis offers new tools and models to enhance our understanding of how higher-order dynamics and interactions shape the organization and give rise to the function of complex systems by providing more accurate representations than traditional network models. These findings pave the way for new research in network science.

Abstract [sv]

Forskning om komplexa system strävar efter att förklara egenskaper som uppstår i sociala, teknologiska och biologiska system genom samspel mellan deras delar. När allt mer data om dessa relationer blir tillgänglig ökar behovet av mer avancerade modeller för att beskriva systemen korrekt och ge djupare insikter.

Den här avhandlingen tar upp utmaningar med att inkludera högre ordningens interaktioner och dynamik i analysen av komplexa system, genom att använda högre ordningens nätverksmodeller. Den behandlar kartläggning av förändrade nätverksstrukturer, modellering av högre ordningens dynamik i vanliga nätverk, kombinering av nätverksstruktur och metadata samt modellering av flerkroppsinteraktioner. De nya verktygen och modellerna ökar vår förståelse för hur högre ordningens dynamik och interaktioner påverkar organisationen och funktionen hos komplexa system. Detta görs genom att erbjuda mer precisa representationer än traditionella nätverksmodeller. Dessa resultat öppnar upp för framtida forskning inom nätverksvetenskap.

Place, publisher, year, edition, pages
Umeå: Umeå universitet , 2023. , p. 65
Keywords [en]
networks, community detection, information theory, the map equation
National Category
Other Physics Topics
Identifiers
URN: urn:nbn:se:umu:diva-206628ISBN: 978-91-7855-984-8 (print)ISBN: 978-91-7855-985-5 (electronic)OAI: oai:DiVA.org:umu-206628DiVA, id: diva2:1750395
Public defence
2023-05-12, NAT.D.410, Naturvetarhuset, Umeå, 09:00 (English)
Opponent
Supervisors
Available from: 2023-04-21 Created: 2023-04-13 Last updated: 2023-04-14Bibliographically approved
List of papers
1. How choosing random-walk model and network representation matters for flow-based community detection in hypergraphs
Open this publication in new window or tab >>How choosing random-walk model and network representation matters for flow-based community detection in hypergraphs
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2021 (English)In: Communications Physics, E-ISSN 2399-3650, Vol. 4, no 1, article id 133Article in journal (Refereed) Published
Abstract [en]

Hypergraphs offer an explicit formalism to describe multibody interactions in complex systems. To connect dynamics and function in systems with these higher-order interactions, network scientists have generalised random-walk models to hypergraphs and studied the multibody effects on flow-based centrality measures. Mapping the large-scale structure of those flows requires effective community detection methods applied to cogent network representations. For different hypergraph data and research questions, which combination of random-walk model and network representation is best? We define unipartite, bipartite, and multilayer network representations of hypergraph flows and explore how they and the underlying random-walk model change the number, size, depth, and overlap of identified multilevel communities. These results help researchers choose the appropriate modelling approach when mapping flows on hypergraphs.

Place, publisher, year, edition, pages
Nature Publishing Group, 2021
National Category
Computer Sciences
Identifiers
urn:nbn:se:umu:diva-184903 (URN)10.1038/s42005-021-00634-z (DOI)000663511200004 ()2-s2.0-85107742703 (Scopus ID)
Available from: 2021-06-22 Created: 2021-06-22 Last updated: 2023-04-14Bibliographically approved
2. Flow-Based Community Detection in Hypergraphs
Open this publication in new window or tab >>Flow-Based Community Detection in Hypergraphs
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2022 (English)In: Higher-Order Systems / [ed] Federico Battiston; Giovanni Petri, Springer Science+Business Media B.V., 2022, , p. 21p. 141-161Chapter in book (Refereed)
Abstract [en]

To connect structure, dynamics and function in systems with multibody interactions, network scientists model random walks on hypergraphs and identify communities that confine the walks for a long time. The two flow-based community-detection methods Markov stability and the map equation identify such communities based on different principles and search algorithms. But how similar are the resulting communities? We explain both methods’ machinery applied to hypergraphs and compare them on synthetic and real-world hypergraphs using various hyperedge-size biased random walks and time scales. We find that the map equation is more sensitive to time-scale changes and that Markov stability is more sensitive to hyperedge-size biases.

Place, publisher, year, edition, pages
Springer Science+Business Media B.V., 2022. p. 21
Series
Understanding Complex Systems, ISSN 1860-0832, E-ISSN 1860-0840
National Category
Computer Sciences
Identifiers
urn:nbn:se:umu:diva-194897 (URN)10.1007/978-3-030-91374-8_4 (DOI)2-s2.0-85129151109 (Scopus ID)978-3-030-91374-8 (ISBN)
Available from: 2022-06-09 Created: 2022-06-09 Last updated: 2023-04-13Bibliographically approved
3. Mapping nonlocal relationships between metadata and network structure with metadata-dependent encoding of random walks
Open this publication in new window or tab >>Mapping nonlocal relationships between metadata and network structure with metadata-dependent encoding of random walks
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2022 (English)In: Science Advances, E-ISSN 2375-2548, Vol. 8, no 43, article id eabn7558Article in journal (Refereed) Published
Abstract [en]

Integrating structural information and metadata, such as gender, social status, or interests, enriches networks and enables a better understanding of the large-scale structure of complex systems. However, existing approaches to augment networks with metadata for community detection only consider immediately adjacent nodes and cannot exploit the nonlocal relationships between metadata and large-scale network structure present in many spatial and social systems. Here, we develop a flow-based community detection framework based on the map equation that integrates network information and metadata of distant nodes and reveals more complex relationships. We analyze social and spatial networks and find that our methodology can detect functional metadata-informed communities distinct from those derived solely from network information or metadata. For example, in a mobility network of London, we identify communities that reflect the heterogeneity of income distribution, and in a European power grid network, we identify communities that capture relationships between geography and energy prices beyond country borders.

Place, publisher, year, edition, pages
American Association for the Advancement of Science (AAAS), 2022
National Category
Computer Sciences
Identifiers
urn:nbn:se:umu:diva-200999 (URN)10.1126/sciadv.abn7558 (DOI)000890263700001 ()36306360 (PubMedID)2-s2.0-85141005553 (Scopus ID)
Available from: 2022-11-16 Created: 2022-11-16 Last updated: 2023-09-05Bibliographically approved
4. Mapping change in higher-order networks with multilevel and overlapping communities
Open this publication in new window or tab >>Mapping change in higher-order networks with multilevel and overlapping communities
(English)Manuscript (preprint) (Other academic)
Abstract [en]

New network models of complex systems use layers, state nodes, or hyperedges to capture higher-order interactions and dynamics. Simplifying how the higher-order networks change over time or depending on the network model would be easy with alluvial diagrams, which visualize community splits and merges between networks. However, alluvial diagrams were developed for networks with regular nodes assigned to non-overlapping flat communities. How should they be defined for nodes in layers, state nodes, or hyperedges? How can they depict multilevel, overlapping communities? Here we generalize alluvial diagrams to map change in higher-order networks and provide an interactive tool for anyone to generate alluvial diagrams. We use the alluvial generator to illustrate the effect of modeling network flows with memory in a citation network, distinguishing multidisciplinary from field-specific journals. 

Keywords
networks, community detection, the map equation
National Category
Other Physics Topics
Identifiers
urn:nbn:se:umu:diva-206626 (URN)10.48550/arXiv.2303.00622 (DOI)
Available from: 2023-04-13 Created: 2023-04-13 Last updated: 2023-04-13
5. Mapping biased higher-order walks reveals overlapping communities
Open this publication in new window or tab >>Mapping biased higher-order walks reveals overlapping communities
(English)Manuscript (preprint) (Other academic)
Abstract [en]

Researchers use networks to model relational data from complex systems, and tools from network science to map them and understand their function. Flow communities capture the organization of various real-world systems such as social networks, protein-protein interactions, and species distributions, and are often overlapping. However, mapping overlapping flow-based communities requires higher-order data, which is not always available. To address this issue, we take inspiration from the representation-learning algorithm node2vec, and apply higher-order biased random walks on first-order networks to obtain higher-order data. But instead of explicitly simulating the walks, we model them with sparse memory networks and control the complexity of the higher-order model with an information-theoretic approach through a tunable information-loss parameter. Using the map equation framework, we partition the resulting higher-order networks into overlapping modules. We find that our method recovers planted overlapping partitions in synthetic benchmarks and identifies overlapping communities in real-world networks.

Keywords
networks, community detection, information theory, the map equation
National Category
Other Physics Topics
Identifiers
urn:nbn:se:umu:diva-206627 (URN)10.48550/arXiv.2304.05775 (DOI)
Available from: 2023-04-13 Created: 2023-04-13 Last updated: 2023-04-13

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Holmgren, Anton

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