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Clinical testing panels for ALS: global distribution, consistency, and challenges
Department of Neurology and Neurosurgery, McGill University, Montreal, Canada.
Schulich School of Medicine and Dentistry, Western University, London, Canada.
Department of Genetics, University of North Carolina, NC, Chapel Hill, United States.
Centre for MND Research, Macquarie Medical School, Macquarie University, Sydney, Australia.
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2023 (English)In: Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, ISSN 2167-8421, E-ISSN 2167-9223, Vol. 24, no 5-6, p. 420-435Article in journal (Refereed) Published
Abstract [en]

Objective: In 2021, the Clinical Genome Resource (ClinGen) amyotrophic lateral sclerosis (ALS) spectrum disorders Gene Curation Expert Panel (GCEP) was established to evaluate the strength of evidence for genes previously reported to be associated with ALS. Through this endeavor, we will provide standardized guidance to laboratories on which genes should be included in clinical genetic testing panels for ALS. In this manuscript, we aimed to assess the heterogeneity in the current global landscape of clinical genetic testing for ALS.

Methods: We reviewed the National Institutes of Health (NIH) Genetic Testing Registry (GTR) and members of the ALS GCEP to source frequently used testing panels and compare the genes included on the tests.

Results: 14 clinical panels specific to ALS from 14 laboratories covered 4 to 54 genes. All panels report on ANG, SOD1, TARDBP, and VAPB; 50% included or offered the option of including C9orf72 hexanucleotide repeat expansion (HRE) analysis. Of the 91 genes included in at least one of the panels, 40 (44.0%) were included on only a single panel. We could not find a direct link to ALS in the literature for 14 (15.4%) included genes.

Conclusions: The variability across the surveyed clinical genetic panels is concerning due to the possibility of reduced diagnostic yields in clinical practice and risk of a missed diagnoses for patients. Our results highlight the necessity for consensus regarding the appropriateness of gene inclusions in clinical genetic ALS tests to improve its application for patients living with ALS and their families.

Place, publisher, year, edition, pages
Taylor & Francis, 2023. Vol. 24, no 5-6, p. 420-435
Keywords [en]
Amyotrophic lateral sclerosis, clinical laboratories, gene panels, gene-disease relationships, genetic testing
National Category
Neurology
Identifiers
URN: urn:nbn:se:umu:diva-206369DOI: 10.1080/21678421.2023.2173015ISI: 000946933700001PubMedID: 36896705Scopus ID: 2-s2.0-85150659766OAI: oai:DiVA.org:umu-206369DiVA, id: diva2:1752870
Available from: 2023-04-25 Created: 2023-04-25 Last updated: 2023-09-29Bibliographically approved

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Andersen, Peter M.

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