Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)Show others and affiliations
2023 (English)In: G3: Genes, Genomes, Genetics, E-ISSN 2160-1836, Vol. 13, no 10, article id jkad192
Article in journal (Refereed) Published
Abstract [en]
Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes.
Place, publisher, year, edition, pages
Oxford University Press, 2023. Vol. 13, no 10, article id jkad192
Keywords [en]
Geodia barretti, metagenome-assembled genome, Porifera, Sweden, symbionts, Tetractinellida
National Category
Genetics and Genomics Evolutionary Biology
Identifiers
URN: urn:nbn:se:umu:diva-215937DOI: 10.1093/g3journal/jkad192ISI: 001058715700001PubMedID: 37619978Scopus ID: 2-s2.0-85174513308OAI: oai:DiVA.org:umu-215937DiVA, id: diva2:1809151
Funder
EU, Horizon 2020, 679849Knut and Alice Wallenberg Foundation2023-11-022023-11-022025-02-01Bibliographically approved