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Open-source python module for the analysis of personalized light exposure data from wearable light loggers and dosimeters
Sleep & Chronobiology Group, GIGA – CRC in Vivo Imaging, University of Liège, Liège, Belgium; Chair of Neurogenetics, Institute of Human Genetics, University Hospital, Technical University of Munich, Munich, Germany.
Umeå University, Faculty of Medicine, Wallenberg Centre for Molecular Medicine at Umeå University (WCMM). Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine). Umeå University, Faculty of Science and Technology, Department of Molecular Biology (Faculty of Science and Technology).ORCID iD: 0000-0003-2480-3329
Chronobiology, Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom.
Centre for Chronobiology, Psychiatric Hospital of the University of Basel, Basel, Switzerland; Transfaculty Platform for Molecular and Cognitive Neuroscience, University of Basel, Basel, Switzerland.
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2024 (English)In: LEUKOS The Journal of the Illuminating Engineering Society of North America, ISSN 1550-2724, E-ISSN 1550-2716, Vol. 20, no 4, p. 380-389Article in journal (Refereed) Published
Abstract [en]

Light exposure fundamentally influences human physiology and behavior, with light being the most important zeitgeber of the circadian system. Throughout the day, people are exposed to various scenes differing in light level, spectral composition and spatio-temporal properties. Personalized light exposure can be measured through wearable light loggers and dosimeters, including wrist-worn actimeters containing light sensors, yielding time series of an individual’s light exposure. There is growing interest in relating light exposure patterns to health outcomes, requiring analytic techniques to summarize light exposure properties. Building on the previously published Python-based pyActigraphy module, here we introduce the module pyLight. This module allows users to extract light exposure data recordings from a wide range of devices. It also includes software tools to clean and filter the data, and to compute common metrics for quantifying and visualizing light exposure data. For this tutorial, we demonstrate the use of pyLight in one example dataset with the following processing steps: (1) loading, accessing and visual inspection of a publicly available dataset, (2) truncation, masking, filtering and binarization of the dataset, (3) calculation of summary metrics, including time above threshold (TAT) and mean light timing above threshold (MLiT). The pyLight module paves the way for open-source, large-scale automated analyses of light-exposure data.

Place, publisher, year, edition, pages
Taylor & Francis, 2024. Vol. 20, no 4, p. 380-389
Keywords [en]
analysis, dosimetry, Light exposure, light loggers, open-source software, python
National Category
Neurosciences
Identifiers
URN: urn:nbn:se:umu:diva-222371DOI: 10.1080/15502724.2023.2296863ISI: 001175109300001Scopus ID: 2-s2.0-85186614127OAI: oai:DiVA.org:umu-222371DiVA, id: diva2:1844678
Funder
Wellcome trust, 204686/Z/16/ZKnut and Alice Wallenberg FoundationAvailable from: 2024-03-14 Created: 2024-03-14 Last updated: 2025-04-24Bibliographically approved

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Wulff, Katharina

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Wallenberg Centre for Molecular Medicine at Umeå University (WCMM)Department of Molecular Biology (Faculty of Medicine)Department of Molecular Biology (Faculty of Science and Technology)
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LEUKOS The Journal of the Illuminating Engineering Society of North America
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