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A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC).ORCID iD: 0000-0001-6031-005X
Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC).ORCID iD: 0000-0002-7906-6891
Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC).ORCID iD: 0000-0001-6097-2539
2011 (English)In: BMC Plant Biology, ISSN 1471-2229, E-ISSN 1471-2229, Vol. 11, 13- p.Article in journal (Refereed) Published
Abstract [en]

We outline a computationally inferred model of the regulatory network of Populus leaves, and show how treating genes as interacting, rather than individual, entities identifies new regulators compared to traditional genomics analysis. Although systems biology models should be used with care considering the complexity of regulatory programs and the limitations of current genomics data, methods describing interactions can provide hypotheses about the underlying cause of emergent properties and are needed if we are to identify target genes other than those constituting the "low hanging fruit" of genomic analysis.

Place, publisher, year, edition, pages
2011. Vol. 11, 13- p.
Keyword [en]
gene-expression data; arabidopsis; sequence; database; trichocarpa; responses; elements; genomes; modules; tools
National Category
Botany
Identifiers
URN: urn:nbn:se:umu:diva-42682DOI: 10.1186/1471-2229-11-13PubMedID: 21232107OAI: oai:DiVA.org:umu-42682DiVA: diva2:409959
Available from: 2011-04-12 Created: 2011-04-12 Last updated: 2017-12-11Bibliographically approved

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Street, Nathaniel RobertJansson, StefanHvidsten, Torgeir

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