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Abstractions for scaling escience applications to distributed computing environments: a StratUm Integration Case Study in Molecular Systems Biology
Umeå University, Faculty of Science and Technology, Department of Computing Science.
Umeå University, Faculty of Science and Technology, Department of Computing Science.
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2012 (English)In: Bioinformatics: proceedings of the international conference on bioinformatics models, methods and algorithms / [ed] Correia, C; Fred, A; Gamboa, H; Schier, J, SETUBAL: SCITEPRESS , 2012, 290-294 p.Conference paper, Abstract (Other academic)
Abstract [en]

Management of eScience computations and resulting data in distributed computing environments is complicated and often introduces considerable overhead. In this work we address a lack of integration tools that provide the abstraction levels, performance, and usability required to facilitate migration of eScience applications to distributed computing environments, In particular, we explore an approach to raising abstraction levels based on separation of computation design computation management and present StratUm, a computation enactment tool for distributed computing environments. Results are illustrated in a case study of integration of a software from the systems biology community with a grid computation management system.

Place, publisher, year, edition, pages
SETUBAL: SCITEPRESS , 2012. 290-294 p.
Keyword [en]
Systems biology, eScience, Grid computing, Cloud computing, Service-oriented architecture
National Category
Computer and Information Science
URN: urn:nbn:se:umu:diva-62177DOI: 10.5220/0003765002900294ISI: 000310729400041ISBN: 978-989-8425-90-4OAI: diva2:575497
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS) Algarve, PORTUGAL FEB 01-04, 2012
Available from: 2012-12-10 Created: 2012-12-10 Last updated: 2012-12-10Bibliographically approved

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Östberg, Per-OlovElmroth, Erik
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