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Telomere length kinetics assay (TELKA) sorts the telomere length maintenance (tlm) mutants into functional groups
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2014 (English)In: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 42, no 10, 6314-6325 p.Article in journal (Refereed) Published
Abstract [en]

Genome-wide systematic screens in yeast have uncovered a large gene network (the telomere length maintenance network or TLM), encompassing more than 400 genes, which acts coordinatively to maintain telomere length. Identifying the genes was an important first stage; the next challenge is to decipher their mechanism of action and to organize then into functional groups or pathways. Here we present a new telomere-length measuring program, TelQuant, and a novel assay, telomere length kinetics assay, and use them to organize tlm mutants into functional classes. Our results show that a mutant defective for the relatively unknown MET7 gene has the same telomeric kinetics as mutants defective for the ribonucleotide reductase subunit Rnr1, in charge of the limiting step in dNTP synthesis, or for the Ku heterodimer, a well-established telomere complex. We confirm the epistatic relationship between the mutants and show that physical interactions exist between Rnr1 and Met7. We also show that Met7 and the Ku heterodimer affect dNTP formation, and play a role in non-homologous end joining. Thus, our telomere kinetics assay uncovers new functional groups, as well as complex genetic interactions between tlm mutants.

Place, publisher, year, edition, pages
Oxford University Press, 2014. Vol. 42, no 10, 6314-6325 p.
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Research subject
Molecular Medicine
Identifiers
URN: urn:nbn:se:umu:diva-87935DOI: 10.1093/nar/gku267ISI: 000338768100024OAI: oai:DiVA.org:umu-87935DiVA: diva2:712386
Funder
Knut and Alice Wallenberg FoundationSwedish Cancer Society
Available from: 2014-04-15 Created: 2014-04-15 Last updated: 2017-12-05Bibliographically approved

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Marjavaara, LisetteChabes, Andrei

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Merenyi, GaborMarjavaara, LisetteChabes, Andrei
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Department of Medical Biochemistry and BiophysicsMolecular Infection Medicine Sweden (MIMS)
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Nucleic Acids Research
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)

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