Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana
2015 (English)In: Genomics Data, ISSN 1025-6059, E-ISSN 2213-5960, Vol. 4, 96-98 p.Article in journal (Refereed) Published
In Arabidopsis, various cell type-specific whole-genome expression analyses have been conducted. However, the vast majority of these were performed with cellular RNA from root tissues or other easily accessible cell types . Nuclear RNA was neglected for a long time as not being representative for transcriptomic studies. In recent years, however, there have been reports describing the validity of nuclear RNA for these types of studies  and . Here we describe the generation, quality assessment and analysis of nuclear transcriptomic data from Arabidopsis embryos published by Slane et al. (2014) . Comparison of nuclear with cellular gene expression demonstrated the usefulness of nuclear transcriptomics.
Place, publisher, year, edition, pages
Elsevier, 2015. Vol. 4, 96-98 p.
Arabidopsis thaliana, Gene expression, Microarray, Nuclear and cellular transcriptome, Pro-embryo and suspensor transcriptome
IdentifiersURN: urn:nbn:se:umu:diva-111799DOI: 10.1016/j.gdata.2015.03.015ISI: 000362674500025PubMedID: 26484189OAI: oai:DiVA.org:umu-111799DiVA: diva2:873485