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Linkage between Fitness of Yeast Cells and Adenylate Kinase Catalysis
Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
Umeå University, Faculty of Science and Technology, Department of Chemistry.
Umeå University, Faculty of Science and Technology, Department of Chemistry.
Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
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2016 (English)In: PLoS ONE, ISSN 1932-6203, E-ISSN 1932-6203, Vol. 11, no 9, e0163115Article in journal (Refereed) Published
Abstract [en]

Enzymes have evolved with highly specific values of their catalytic parameters kcat and KM. This poses fundamental biological questions about the selection pressures responsible for evolutionary tuning of these parameters. Here we are address these questions for the enzyme adenylate kinase (Adk) in eukaryotic yeast cells. A plasmid shuffling system was developed to allow quantification of relative fitness (calculated from growth rates) of yeast in response to perturbations of Adk activity introduced through mutations. Biophysical characterization verified that all variants studied were properly folded and that the mutations did not cause any substantial differences to thermal stability. We found that cytosolic Adk is essential for yeast viability in our strain background and that viability could not be restored with a catalytically dead, although properly folded Adk variant. There exist a massive overcapacity of Adk catalytic activity and only 12% of the wild type kcat is required for optimal growth at the stress condition 20°C. In summary, the approach developed here has provided new insights into the evolutionary tuning of kcat for Adk in a eukaryotic organism. The developed methodology may also become useful for uncovering new aspects of active site dynamics and also in enzyme design since a large library of enzyme variants can be screened rapidly by identifying viable colonies.

Place, publisher, year, edition, pages
2016. Vol. 11, no 9, e0163115
National Category
Biochemistry and Molecular Biology
Identifiers
URN: urn:nbn:se:umu:diva-125853DOI: 10.1371/journal.pone.0163115ISI: 000383891900032PubMedID: 27642758OAI: oai:DiVA.org:umu-125853DiVA: diva2:972274
Funder
Swedish Research Council, 621-2013-5954Swedish Research Council, 621-2012-3576
Available from: 2016-09-20 Created: 2016-09-20 Last updated: 2017-11-21Bibliographically approved

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Tükenmez, HasanMagnussen, HelgeKovermann, MichaelByström, AndersWolf-Watz, Magnus
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