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  • 251. Amorim, Gisele C
    et al.
    Cisneros, David A.
    Unité de Génétique Moléculaire, Département de MicrobiologieInstitut Pasteur, Paris Cedex 15 France; CNRS, ERL 3526, Paris, France.
    Delepierre, Muriel
    Francetic, Olivera
    Izadi-Pruneyre, Nadia
    ¹H, ¹⁵N and ¹³C resonance assignments of PpdD, a type IV pilin from enterohemorrhagic Escherichia coli2014In: Biomolecular NMR Assignments, ISSN 1874-2718, E-ISSN 1874-270X, Vol. 8, no 1, p. 43-46Article in journal (Refereed)
    Abstract [en]

    Bacterial type 4 pili (T4P) are long flexible fibers involved in adhesion, DNA uptake, phage transduction, aggregation and a flagella-independent movement called "twitching motility". T4P comprise thousands of copies of the major pilin subunit, which is initially inserted in the plasma membrane, processed and assembled into dynamic helical filaments. T4P are crucial for host colonization and virulence of many Gram-negative bacteria. In enterohemorrhagic Escherichia coli the T4P, called hemorrhagic coli pili (HCP) promote cell adhesion, motility, biofilm formation and signaling. To understand the mechanism of HCP assembly and function, we analyzed the structure of the major subunit prepilin peptidase-dependent protein D (PpdD) (also called HcpA), a 15 kDa pilin with two potential disulfide bonds. Here we present the (1)H, (15)N and (13)C backbone and side chain resonance assignments of the C-terminal globular domain of PpdD as a first step to its structural determination.

  • 252. Amotchkina, Tatiana
    et al.
    Trubetskov, Michael K.
    Pervak, Yurij
    Veisz, Laszlo
    Max-Planck-Institut für Quantenoptik, D-85748 Garching, Germany.
    Pervak, Vladimir
    Stress compensation with antireflection coatings for ultrafast laser applications: from theory to practice2014In: Optics Express, ISSN 1094-4087, E-ISSN 1094-4087, Vol. 22, no 24, p. 30387-30393Article in journal (Refereed)
    Abstract [en]

    Each complicated coating, in particular, a dispersive mirror consists of dozens of layers. Thin films layers have mechanical stresses. After summing up stresses from all layers, the resulting stress is high enough to bend even a relatively thick substrate. To avoid this effect we suggest depositing an antireflection coating (AR) at the back-side of the substrate which together with suppression of unwanted reflections from the back side will also compensate this stress. We demonstrate unique, extremely thick and sophisticated AR coating consisting of 71 layers with the total physical thickness of 7.5 µm. This AR coating completely compensates stress from the dispersive mirror coated on the front side and minimizes unwanted reflections.

  • 253. Ampel, Linda
    et al.
    Bigler, Christian
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Wohlfarth, Barbara
    Risberg, Jan
    Lotter, André F
    Veres, Daniel
    Modest summer temperature variability during DO cycles in western Europe2010In: Quaternary Science Reviews, ISSN 0277-3791, E-ISSN 1873-457X, Vol. 29, no 11/12, p. 1322-1327Article in journal (Refereed)
    Abstract [en]

    Abrupt climatic shifts between cold stadials and warm interstadials, termed Dansgaard-Oeschger (DO) cycles, occurred frequently during the Last Glacial. Their imprint is registered in paleorecords worldwide, but little is known about the actual temperature change both annually and seasonally in different regions. A recent hypothesis based on modelling studies, suggests that DO cycles were characterised by distinct changes in seasonality in the Northern Hemisphere. The largest temperature change between stadial and interstadial phases would have occurred during the winter and spring seasons, whereas the summer seasons would have experienced a rather muted temperature shift. Here we present a temporally high-resolved reconstruction of summer temperatures for eastern France during a sequence of DO cycles between 36 and 18 thousand years before present. The reconstruction is based on fossil diatom assemblages from the paleolake Les Echets and indicates summer temperature changes of ca 0.5–2 °C between stadials and interstadials. This study is the first to reconstruct temperatures with a sufficient time resolution to investigate DO climate variability in continental Europe. It is therefore also the first proxy record that can test and support the hypothesis that temperature changes during DO cycles were modest during the summer season.

  • 254. Amstutz, Cynthia L.
    et al.
    Fristedt, Rikard
    Schultink, Alex
    Merchant, Sabeeha S.
    Niyogi, Krishna K.
    Malnoë, Alizée
    Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC). Howard Hughes Medical Institute, University of California, Berkeley, CA, USA; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
    An atypical short-chain dehydrogenase–reductase functions in the relaxation of photoprotective qH in Arabidopsis2020In: Nature Plants, ISSN 2055-026X, Vol. 6, p. 154-166Article in journal (Refereed)
    Abstract [en]

    Photosynthetic organisms experience wide fluctuations in light intensity and regulate light harvesting accordingly to prevent damage from excess energy. The antenna quenching component qH is a sustained form of energy dissipation that protects the photosynthetic apparatus under stress conditions. This photoprotective mechanism requires the plastid lipocalin LCNP and is prevented by SUPPRESSOR OF QUENCHING1 (SOQ1) under non-stress conditions. However, the molecular mechanism of qH relaxation has yet to be resolved. Here, we isolated and characterized RELAXATION OF QH1 (ROQH1), an atypical short-chain dehydrogenase–reductase that functions as a qH-relaxation factor in Arabidopsis. The ROQH1 gene belongs to the GreenCut2 inventory specific to photosynthetic organisms, and the ROQH1 protein localizes to the chloroplast stroma lamellae membrane. After a cold and high-light treatment, qH does not relax in roqh1 mutants and qH does not occur in leaves overexpressing ROQH1. When the soq1 and roqh1 mutations are combined, qH can neither be prevented nor relaxed and soq1 roqh1 displays constitutive qH and light-limited growth. We propose that LCNP and ROQH1 perform dosage-dependent, antagonistic functions to protect the photosynthetic apparatus and maintain light-harvesting efficiency in plants.

  • 255.
    Amundsson, Katharina
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Control of marine plankton respiration: High temperature sensitivity at low temperatures influenced by substrate availability2016Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Temperature dependence of marine plankton respiration is an important factor in understanding the function and changes in the ecosystem of the ocean. The aim of this study is to test the temperature sensitivity (Q10) of plankton respiration. The oxygen optode method was used to measure plankton respiration. Natural water samples from the Baltic Sea was incubated at short (in situ +1, +2, +3°C) and long (in situ +5, +10, +20°C) temperature intervals with influence of dissolved organic matter (DOC). The Arrhenius equation and Q10-model was used to determine the temperature dependence (Q10) of respiration at different temperatures. There was a significant difference in Q10 between short temperature intervals at low temperatures (p=0,008) and long temperature intervals at higher temperatures. There was no significant difference between long and short temperature intervals when DOC was added (p=0,094). A significant effect could be seen with the DOC enrichment at low temperatures, where the Q10-values became significantly lower (p=0,002) after DOC addition. This effect could, however, not be seen at higher temperatures (p=0,117). Together with results from earlier studies it was concluded that the difference in temperature depends on the actual temperature and not the length of the interval. Lowered temperature dependence at raised DOC concentration, was the opposite of what was expected. The results suggest that the importance of temperature for CO2 emissions and development of hypoxia in the sea may have been underestimated.

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  • 256.
    Anani, Adi
    Umeå University, Faculty of Science and Technology, Department of Applied Physics and Electronics.
    M-learning in review: Technology, standard and evaluation2008In: Journal of Communication and Computer, ISSN 1548-7709, Vol. 5, no 11, p. 1-6Article in journal (Refereed)
    Abstract [en]

    Nowadays E-learning as a form of learning depending on networks and computer devices has been expanding by leaps and bounds. As a special kind of E-learning, M-learning (mobile learning) aims at the use of mobile devices anywhere at anytime by anybody. In this paper, the technologies to develop a M-learning system is deeply analyzed according to the layer model at first. Secondly, from the view of application, the standardization in M-learning is researched in order to accelerate the development and popularization of M-learning. Finally, quality estimation of M-learning system is discussed from the view of QoE (quality of experiences). The experience form end-user is the sole effective norm to judge the result of M-learning technology. It is no doubt that technologies, standardization and evaluation will play very important parts in the course of M-learning development.

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  • 257.
    Anderl, Ines
    Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
    Activation of the Cellular Immune Response in Drosophila melanogaster Larvae2015Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    During the last 40 years, Drosophila melanogaster has become an invaluable tool in understanding innate immunity. The innate immune system of Drosophila consists of a humoral and a cellular component. While many details are known about the humoral immune system, our knowledge about the cellular immune system is comparatively small. Blood cells or hemocytes constitute the cellular immune system. Three blood types have been described for Drosophila larvae. Plasmatocytes are phagocytes with a plethora of functions. Crystal cells mediate melanization and contribute to wound healing. Plasmatocytes and crystal cells constitute the blood cell repertoire of a healthy larva, whereas lamellocytes are induced in a demand-adapted manner after infection with parasitoid wasp eggs. They are involved in the melanotic encapsulation response against parasites and form melanotic nodules that are also referred to as tumors.

    In my thesis, I focused on unraveling the mechanisms of how the immune system orchestrates the cellular immune response. In particular, I was interested in the hematopoiesis of lamellocytes.

    In Article I, we were able to show that ectopic expression of key components of a number of signaling pathways in blood cells induced the development of lamellocytes, led to a proliferative response of plasmatocytes, or to a combination of lamellocyte activation and plasmatocyte proliferation.

    In Article II, I combined newly developed fluorescent enhancer-reporter constructs specific for plasmatocytes and lamellocytes and developed a “dual reporter system” that was used in live microscopy of fly larvae. In addition, we established flow cytometry as a tool to count total blood cell numbers and to distinguish between different blood cell types. The “dual reporter system” enabled us to differentiate between six blood cell types and established proliferation as a central feature of the cellular immune response. The combination flow cytometry and live imaging increased our understanding of the tempo-spatial events leading to the cellular immune reaction.

    In Article III, I developed a genetic modifier screen to find genes involved in the hematopoiesis of lamellocytes. I took advantage of the gain-of-function phenotype of the Tl10b mutation characterized by an activated cellular immune system, which induced the formation blood cell tumors. We screened the right arm of chromosome 3 for enhancers and suppressors of this mutation and uncovered ird1.

    Finally in Article IV, we showed that the activity of the Toll signaling pathway in the fat body, the homolog of the liver, is necessary to activate the cellular immune system and induce lamellocyte hematopoiesis.

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  • 258.
    Anderl, Ines
    Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
    Infection-induced proliferation is a central hallmark of the activation of the cellular immune response in Drosophila larvae.Manuscript (preprint) (Other academic)
    Abstract [en]

    Blood cells have important roles in immune reactions in all metazoan species. In Drosophila melanogaster larvae, phagocytic plasmatocytes are the main blood cell (hemocyte) type. Lamellocytes participate in encapsulating foreign objects and are formed in response to parasitoid wasps laying their eggs into the hemocoel of the larvae. The immune reaction against wasps requires controlled recruitment and action of hemocytes from the lymph glands, sessile islets and circulation. However, the contribution of these different hematopoietic compartments to the immune-induced hemocyte pool remains unclear. We used eater-GFP and MSNF9MO-mCherry to fluorescently tag plasmatocytes and lamellocytes, respectively, and utilized flow cytometry and in vivo imaging to assess the hemocyte numbers and types in circulation and in sessile compartments after infection by three wasp species of the genus Leptopilina. We detected five different hemocyte types based on fluorescence, and a population of non-fluorescent cells. While non-infected larvae generally had only one, eaterGFP-high plasmatocyte population, early after wasp infection a new, eaterGFP-low cell population appeared in circulation. EaterGFP-high and –low cells both accumulated msnCherry during the immune response, and formed two cell lineages. Whereas the eaterGFP-low cells gradually lost GFP, the eaterGFP-high cells retained it at high levels. We suggest that eaterGFP-low cells represent an immune-induced hemocyte precursor cell pool, which, via a prelamellocyte stage, gives rise to lamellocytes. EaterGFP-high plasmatocytes also differentiated into large, msnCherry-positive hemocytes on wasp eggs, but these cells retain plasmatocyte identity. Importantly, all hemocyte types, except for lamellocytes, were able to divide after wasp infection, contributing to the increased hemocyte numbers after infection. We conclude that orchestrated differentiation and division of different hemocyte types in circulation and in sessile compartment is key to a successful immune response against parasitoid wasps.

  • 259.
    Andersdotter Persson, Anna
    Umeå University, Faculty of Social Sciences, Department of Statistics.
    Kalibrering som ett sätt att hantera bortfall: Vilken korrelation krävs mellan hjälp- och responsvariabler?2010Independent thesis Advanced level (degree of Master (One Year)), 10 credits / 15 HE creditsStudent thesis
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  • 260. Andersen, G. Neumann
    et al.
    Andersen, M.
    Nagaeva, Olga
    Umeå University, Faculty of Medicine, Department of Clinical Microbiology, Clinical Immunology.
    Wikberg, J. E. S.
    Mincheva-Nilsson, Lucia
    Umeå University, Faculty of Medicine, Department of Clinical Microbiology, Clinical Immunology.
    Dermal Melanocortin Receptor Rebound in Diffuse Systemic Sclerosis after Anti-TGF ss 1 Antibody Therapy2012In: Scandinavian Journal of Immunology, ISSN 0300-9475, E-ISSN 1365-3083, Vol. 76, no 5, p. 478-482Article in journal (Refereed)
    Abstract [en]

    Disturbed transforming growth factor beta (TGF beta) signalling leads to enhanced synthesis of extracellular matrix (ECM), which is manifested as systemic sclerosis (SSc), but this may be attenuated by the melanocortin system. Here, we report of rebound reaction in the gene expression of melanocortin receptor (MCR) subtypes and of the precursor of these receptors ligands, the pro-opio-melanocortin protein (POMC), in the acute skin lesion of diffuse systemic sclerosis (dSSc) after treatment with a recombinant human anti-TGF beta 1 antibody. Biopsies, taken from the leading edge of the skin lesion, before and after treatment of a patient with recent onset dSSc, were examined. Before treatment, increased levels of TGF beta mRNA and suppressed levels of POMC mRNA and MCR subtypes MC1-3, 5R mRNAs were seen in the lesion, compared with healthy controls. After treatment, there was a rebound expression of POMC, MC2, 3, 5R mRNAs. As the melanocortin system regulates collagen and melanin production, our findings add a new understanding to the pathogenetic mechanisms involved in the acute skin lesion of dSSc, which is characterized by enhanced ECM formation and changes in skin pigmentation.

  • 261.
    Andersen, K. H.
    et al.
    Tech Univ Denmark, Denmark.
    Berge, T.
    Tech Univ Denmark, Denmark ; Univ Copenhagen, Denmark.
    Goncalves, R. J.
    Tech Univ Denmark, Denmark ;Consejo Nacl Invest Cient & Tecn, Argentina ; Estn Fotobiol Playa Union, Argentina.
    Hartvig, M.
    Tech Univ Denmark, Denmark ; Univ Copenhagen, Denmark ; Univ Göttingen, Germany.
    Heuschele, J.
    Tech Univ Denmark, Denmark.
    Hylander, Samuel
    Linnéuniversitetet, Institutionen för biologi och miljö (BOM).
    Jacobsen, N. S.
    Tech Univ Denmark, Denmark.
    Lindemann, C.
    Tech Univ Denmark, Denmark.
    Martens, E. A.
    Tech Univ Denmark, Denmark ; Univ Copenhagen, Denmark.
    Neuheimer, A. B.
    Tech Univ Denmark, Denmark ; Univ Hawaii Manoa, USA.
    Olsson, K.
    Tech Univ Denmark, Denmark.
    Palacz, A.
    Tech Univ Denmark, Denmark.
    Prowe, A. E. F.
    Tech Univ Denmark, Denmark ; GEOMAR Helmholtz Ctr Ocean Res Kiel, Germany.
    Sainmont, J.
    Tech Univ Denmark, Denmark.
    Traving, S. J.
    Tech Univ Denmark, Denmark ; Univ Copenhagen, Denmark.
    Visser, A. W.
    Tech Univ Denmark, Denmark.
    Wadhwa, N.
    Tech Univ Denmark, Denmark.
    Kiorboe, T.
    Tech Univ Denmark, Denmark.
    Characteristic Sizes of Life in the Oceans, from Bacteria to Whales2016In: Annual Review of Marine Science, ISSN 1941-1405, E-ISSN 1941-0611, Vol. 8, p. 217-241Article in journal (Refereed)
    Abstract [en]

    The size of an individual organism is a key trait to characterize its physiology and feeding ecology. Size-based scaling laws may have a limited size range of validity or undergo a transition from one scaling exponent to another at some characteristic size. We collate and review data on size-based scaling laws for resource acquisition, mobility, sensory range, and progeny size for all pelagic marine life, from bacteria to whales. Further, we review and develop simple theoretical arguments for observed scaling laws and the characteristic sizes of a change or breakdown of power laws. We divide life in the ocean into seven major realms based on trophic strategy, physiology, and life history strategy. Such a categorization represents a move away from a taxonomically oriented description toward a trait-based description of life in the oceans. Finally, we discuss life forms that transgress the simple size-based rules and identify unanswered questions.

  • 262. Anderson, James V.
    Ramos-Sánchez, José M.
    Conde, Daniel
    Ibáñez, Christian
    Takata, Naoki
    Allona, Isabel
    Eriksson, Maria E.
    Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC).
    Role of the Circadian Clock in Cold Acclimation and Winter Dormancy in Perennial Plants2015Collection (editor) (Refereed)
    Abstract [en]

    Seasonal variation is a strong cue directing the growth and development of plants. It is particularly important for perennials growing in temperate and boreal regions where woody plants must become dormant to survive freezing winter temperatures. Shortening of the photoperiod induces growth cessation, bud set and a first degree of cold acclimation in most woody plants. The subsequent drop in temperature then produces a greater tolerance to cold and, in deciduous trees, leaf senescence and fall. Trees must time their periods of dormancy accurately with their environment. Circadian clocks underlie this ability, allowing organisms to predict regular, daily changes in their environment as well as longer term seasonal changes. This chapter provides an update on the plant clock in a model annual, thale cress (Arabidopsis thaliana), and further summarizes recent advances about the clock in perennial plants and its involvement in their annual growth cycles, which allows trees to withstand cold and freezing temperatures. Moreover, we outline our views on areas where future work on the circadian clock is necessary to gain insight into the life of a tree.

  • 263. Anderson, K. E.
    et al.
    Nisbet, R. M.
    Diehl, S.
    Umeå University, Faculty of Science and Technology, Ecology and Environmental Science.
    Spatial scaling of consumer-resource interactions in advection-dominated systems2006In: American Naturalist, Vol. 168, no 3, p. 358-372Article in journal (Refereed)
    Abstract [en]

    Ecologists studying consumer-resource interactions in advection-dominated systems such as streams and rivers frequently seek to link the results of small-scale experiments with larger-scale patterns of distribution and abundance. Accomplishing this goal requires determining the characteristic scale, termed the response length, at which there is a shift from local dynamics dominated by advective dispersal to larger-scale dynamics dominated by births and deaths. Here, we model the dynamics of consumer-resource systems in a spatially variable, advective environment and show how consumer-resource interactions alter the response length relative to its single-species value. For one case involving a grazer that emigrates in response to high predator density, we quantify the changes using published data from small-scale experiments on aquatic invertebrates. Using Fourier analysis, we describe the responses of advection-dominated consumer-resource systems to spatially extended environmental variability in a way that involves explicit consideration of the response length. The patterns we derive for different consumer-resource systems exhibit important similarities in how component populations respond to spatial environmental variability affecting dispersal as opposed to demographic parameters.

  • 264. Anderson, K. E.
    et al.
    Nisbet, R. M.
    Diehl, S.
    Umeå University, Faculty of Science and Technology, Ecology and Environmental Science.
    Cooper, S. D.
    Scaling population responses to spatial environmental variability in advection-dominated systems2005In: Ecology Letters, Vol. 8, no 9, p. 933-943Article in journal (Refereed)
    Abstract [en]

    We model the spatial dynamics of an open population of organisms that disperse solely through advection in order to understand responses to multiscale environmental variability. We show that the distance over which a population responds to a localized perturbation, called the response length, can be characterized as an organisms average lifetime dispersal distance, unless there is strong density-dependence in demographic or dispersal rates. Continuous spatial fluctuations in demographic rates at scales smaller than the response length will be largely averaged in the population distribution, whereas those in per capita emigration rates will be strongly tracked. We illustrate these results using a parameterized example to show how responses to environmental variability may differ in streams with different average current velocities. Our model suggests an approach to linking local dynamics dominated by dispersal processes to larger-scale dynamics dominated by births and deaths.

  • 265. Anderson, N. John
    et al.
    Saros, Jasmine E.
    Bullard, Joanna E.
    Cahoon, Sean M. P.
    Mcgowan, Suzanne
    Bagshaw, Elizabeth A.
    Barry, Christopher D.
    Bindler, Richard
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Burpee, Benjamin T.
    Carrivick, Jonathan L.
    Fowler, Rachel A.
    Fox, Anthony D.
    Fritz, Sherilyn C.
    Giles, Madeleine E.
    Hamerlik, Ladislav
    Ingeman-Nielsen, Thomas
    Law, Antonia C.
    Mernild, Sebastian H.
    Northington, Robert M.
    Osburn, Christopher L.
    Pla-Rabes, Sergi
    Post, Eric
    Telling, Jon
    Stroud, David A.
    Whiteford, Erika J.
    Yallop, Marian L.
    Yde, Jacob C.
    The Arctic in the Twenty-First Century: Changing Biogeochemical Linkages across a Paraglacial Landscape of Greenland2017In: BioScience, ISSN 0006-3568, E-ISSN 1525-3244, Vol. 67, no 2, p. 118-133Article in journal (Refereed)
    Abstract [en]

    The Kangerlussuaq area of southwest Greenland encompasses diverse ecological, geomorphic, and climate gradients that function over a range of spatial and temporal scales. Ecosystems range from the microbial communities on the ice sheet and moisture-stressed terrestrial vegetation (and their associated herbivores) to freshwater and oligosaline lakes. These ecosystems are linked by a dynamic glacio-fluvial-aeolian geomorphic system that transports water, geological material, organic carbon and nutrients from the glacier surface to adjacent terrestrial and aquatic systems. This paraglacial system is now subject to substantial change because of rapid regional warming since 2000. Here, we describe changes in the eco-and geomorphic systems at a range of timescales and explore rapid future change in the links that integrate these systems. We highlight the importance of cross-system subsidies at the landscape scale and, importantly, how these might change in the near future as the Arctic is expected to continue to warm.

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  • 266. Anderson, N.J.
    et al.
    Appleby, P.G.
    Bindler, Richard
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Renberg, I.
    Conley, D.J.
    Fritz, S.C.
    Jones, V.J.
    Whiteford, E.J.
    Yang, H
    Landscape-Scale Variability of Organic Carbon Burial by SW Greenland Lakes2019In: Ecosystems (New York. Print), ISSN 1432-9840, E-ISSN 1435-0629, Vol. 22, no 8, p. 1706-1720Article in journal (Refereed)
    Abstract [en]

    Lakes are a key feature of arctic landscapes and can be an important component of regional organic carbon (OC) budgets, but C burial rates are not well estimated. 210Pb-dated sediment cores and carbon and organic matter (as loss-on-ignition) content were used to estimate OC burial for 16 lakes in SW Greenland. Burial rates were corrected for sediment focusing using the 210Pb flux method. The study lakes span a range of water chemistries (conductivity range 25–3400 µS cm−1), areas (< 4–100 ha) and maximum depths (~ 10–50 m). The regional average focusing-corrected OC accumulation rate was ~ 2 g C m−2 y−1 prior to ~ 1950 and 3.6 g C m−2 y−1 after 1950. Among-lake variability in post-1950 OC AR was correlated with in-lake dissolved organic carbon concentration, conductivity, altitude and location along the fjord. Twelve lakes showed an increase in mean OC AR over the analyzed time period, ~ 1880–2000; as the study area was cooling until recently, this increase is probably attributable to other global change processes, for example, altered inputs of N or P. There are ~ 20,000 lakes in the study area ranging from ~ 1 ha to more than 130 km2, although over 83% of lakes are less than 10 ha. Extrapolating the mean post-1950 OC AR (3.6 g C m−2 y−1) to all lakes larger than 1000 ha and applying a lower rate of ~ 2 g C m−2 y−1 to large lakes (> 1000 ha) suggests a regional annual lake OC burial rate of ~ 10.14 × 109 g C y−1 post 1950. Given the low C content of soils in this area, lakes represent a substantial regional C store.

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  • 267. Anderssen, C.
    et al.
    Lindgren, R.
    Umeå University, Faculty of Science and Technology, Department of Applied Physics and Electronics.
    Carvalho, R.
    Umeå University, Faculty of Science and Technology, Department of Applied Physics and Electronics.
    Malmborg, V.
    Ahlberg, E.
    García-López, N.
    Umeå University, Faculty of Science and Technology, Department of Applied Physics and Electronics.
    Eriksson, A.
    Kristensen, T.B.
    Svenningsson, B.
    Boman, C.
    Umeå University, Faculty of Science and Technology, Department of Applied Physics and Electronics.
    Pagels, J.
    SOA Formation and Particle Characteristics in the Emissions from Biomass Cook Stoves Used in the Developing Countries2017In: SOA Formation and Particle Characteristics in the Emissions from Biomass Cook Stoves Used in the Developing Countries, 2017Conference paper (Refereed)
  • 268.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Ahlinder, J.
    Mathisen, Peter
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Hagglund, M.
    Backman, S.
    Nilsson, E.
    Sjodin, A.
    Thelaus, J.
    Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems2018In: Scientific Reports, ISSN 2045-2322, E-ISSN 2045-2322, Vol. 8, article id 8415Article in journal (Refereed)
    Abstract [en]

    The long co-existence of bacteria and protozoa has led to the development of bacterial protozoa resistance strategies, which are suggested to serve as drivers for the evolution of pathogenic bacteria. However, the ecological mechanisms underpinning selection for protozoa-resistance in aquatic bacteria are poorly known. To assess the role of nutrient availability and predation-pressure on selection for protozoa-resisting bacteria (PRB), an enrichment-dilution experiment was designed using laboratory microcosms containing natural lake water. PRB was monitored by screening 16S rRNA amplicon sequence data for reads assigned to bacteria that previously has been shown to resist degradation by amoebae. To estimate the effects of the microbial food web dynamics (microscopy of; heterotrophic bacteria, phytoplankton, protozoa and rotifers) and physicochemical variables on the PRB abundance in the study system, a joint species distribution modelling approach was used. The predation-pressure (ratio between predator and bacterial biomass) had a positive effect on the abundance of the PRB genus Mycobacterium, while perturbation (enrichment and dilution) favored the PRB genus Pseudomonas that dominated the bacterial community in the disturbed systems. Our results show that PRB with different ecological strategies can be expected in water of high and intermediate nutrient levels and after major disturbances of an aquatic system.

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  • 269.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Ahlinder, Jon
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Mathisen, Peter
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Bäckman, Stina
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Nilsson, Elin
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Hammarström, Moa
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Sjödin, Andreas
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Thelaus, Johanna
    Division of CBRN Defence and Security, Swedish Defence Research Agency, FOI, SE-901 82 Umeå, Sweden.
    Aquatic ecosystems at risk for occurrence of pathogenic bacteriaManuscript (preprint) (Other academic)
    Abstract [en]

    Pathogenic bacteria occur naturally in aquatic systems. Co-existence of bacteria and protozoa has led to development of predation resistance strategies, which is suggested to serve as a driver for evolution of pathogenic bacteria. However, the ecological mechanisms for selection for different types of predation resistant and pathogenic bacteria are poorly known. To disentangle effects from nutrient availability and protozoan predation pressure on the occurrence of varying predation resistant bacterial genera, an enrichment-dilution experiment was performed where an aquatic bacterial community was exposed to protozoa. Operational taxonomical units, specific for three predation resistant bacterial genera were identified; Pseudomonas, Rickettsia and Mycobacterium. These genera are also known to harbor species that are potentially pathogenic to mammals. Rickettsia and Mycobacterium were promoted where protozoa were abundant and the predation pressure high, while Pseudomonas dominated the bacterial community at the highest nutrient level where the predation pressure on bacteria were low. Our study thus indicates that waters of all nutrient states can harbor pathogenic bacteria, but that bacteria with different ecological strategies occur depending on nutrient level and perturbation. The generative model approach presented here provide a possibility to integrate environmental data in prediction models of pathogens in complex environments.

  • 270.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Brugel, Sonia
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Paczkowska, Joanna
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Rowe, Owen F.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF). Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, Helsinki, Finland.
    Figueroa, Daniela
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Kratzer, S.
    Legrand, C.
    Influence of allochthonous dissolved organic matter on pelagic basal production in a northerly estuary2018In: Estuarine, Coastal and Shelf Science, ISSN 0272-7714, E-ISSN 1096-0015, Vol. 204, p. 225-235Article in journal (Refereed)
    Abstract [en]

    Phytoplankton and heterotrophic bacteria are key groups at the base of aquatic food webs. In estuaries receiving riverine water with a high content of coloured allochthonous dissolved organic matter (ADOM), phytoplankton primary production may be reduced, while bacterial production is favoured. We tested this hypothesis by performing a field study in a northerly estuary receiving nutrient-poor, ADOM-rich riverine water, and analyzing results using multivariate statistics. Throughout the productive season, and especially during the spring river flush, the production and growth rate of heterotrophic bacteria were stimulated by the riverine inflow of dissolved organic carbon (DOC). In contrast, primary production and photosynthetic efficiency (i.e. phytoplankton growth rate) were negatively affected by DOC. Primary production related positively to phosphorus, which is the limiting nutrient in the area. In the upper estuary where DOC concentrations were the highest, the heterotrophic bacterial production constituted almost 100% of the basal production (sum of primary and bacterial production) during spring, while during summer the primary and bacterial production were approximately equal. Our study shows that riverine DOC had a strong negative influence on coastal phytoplankton production, likely due to light attenuation. On the other hand DOC showed a positive influence on bacterial production since it represents a supplementary food source. Thus, in boreal regions where climate change will cause increased river inflow to coastal waters, the balance between phytoplankton and bacterial production is likely to be changed, favouring bacteria. The pelagic food web structure and overall productivity will in turn be altered.

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  • 271.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Molecular Biology (Faculty of Science and Technology). Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Hajdu, Susanna
    Inst. f. Systemekologi, Stockholms universitet.
    Haecky, Pia
    Umeå University, Faculty of Science and Technology, Department of Molecular Biology (Faculty of Science and Technology). Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Kuparinen, Jorma
    Wikner, Johan
    Umeå University, Faculty of Science and Technology, Department of Molecular Biology (Faculty of Science and Technology). Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Succession and growth limitation of phytoplankton in the Gulf of Bothnia (Baltic Sea)1996In: Marine Biology, ISSN 0025-3162, E-ISSN 1432-1793, Vol. 126, no 4, p. 791-801Article in journal (Refereed)
    Abstract [en]

    A one year field study of four stations in the Gulf of Bothnia during 1991 showed that the biomass was ca. two times, and primary productivity ca, four times, lower in the north (Bothnian Bay) than in the south (Bothnian Sea) during the summer. Nutrient addition experiments indicated phosphorus limitation of phytoplankton in the Bothnian Bay and the coastal areas in the northern Bothnian Sea, but nitrogen limitation in the open Bothnian Sea. A positive correlation between the phosphate concentration and the production/biomass ratio of phytoplankton was demonstrated, which partly explained the differences in the specific growth rate of the phytoplankton during the summer. Differences in photosynthetic active radiation between the stations also showed a covariation with the primary productivity. The relative importance of nutrient or light limitation for photosynthetic carbon fixation could not, however, be conclusively determined from this study. Marked differences in phytoplankton species composition from north to south were also observed. The number of dominating species was higher in the Bothnian Sea than in the Bothnian Bay. The distribution of some species could be explained as due to nutrient availability (e.g. Nodularia spumigena, Aphanizomenon sp.), while salinity probably limits the distribution of some limnic as well as marine species. The potentially toxic phytoplankton N. spumigena, Dinophysis acuminata and Chrysochromulina spp. were common in the Bothnian Sea but not in the Bothnian Bay. The pico- and nanoplankton biomass during late summer was higher than previously reported due to a revised carbon/volume ratio.

  • 272.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Hansen, Wenche
    Länsstyrelsen Västernorrland.
    Wänstrand, Ingrid
    Länsstyrelsen Gävleborg.
    Huseby, Siv
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Wikner, Johan
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Strategi för kontrollerande övervakning av Bottenhavets vattendistrikt2008Report (Other academic)
    Abstract [sv]

    Ett pelagialprogram har tagits fram för övervakning i relativt opåverkade referensområden i kustvattentyperna 16 t.o.m.19 i Bottemhavet. Programmet bör kunna ligga till grund för uppföljning av internationella, nationella och regionala miljömål samt följa upp ekologisk status. Den rumsliga variationen samt mellanårsvariationen hos pelagiala variabler i Bottenhavsområdet har använts som utgångspunkt för att beräkna provtagningsbehovet. Det föreslagna programmet innebär att mellan 48 och 60 provtagningar årsperiod, varefter ekologisk status kan bedömas. Designen gör det möjligt att med 80 % säkerhet bedöma ekologisk status med mätdata som ligger minst 20 % från klassgränserna. Mätprogrammet är designat för provtagningar -årsperiod. Stationer har slumpats ut i de olika typerna, och förslag på årliga provtagningslokaler anges i rapporten. Eftersom djupet vid de olika stationerna varierar, bör de flesta pelagiala variablerna provtas vid ett diskret djup i övre delen av vattenmassan, t.ex. 1 m djup. Av vetenskapliga och ekonomiska skäl är det viktigt att pelagialprogrammet samordnas för hela Bottenhavet.

    För mjukbottenfauna bedöms det befintliga integrerade programmet för trendanalys i Bottenhavet kunna tillgodose Vattendirektivets behov för kontrollerande övervakning i distriktet. Detta under förutsättning att Sundsvallsbuktens program fortsätter och att de nya nationella och regionala provtagningsområdena i södra Bottenhavet (Gräsö) etableras och drivs. Dimensioneringen av nuvarande nationellt och regionalt bottenfaunaprogram och områdesövervakning men har även visat sig vara väl anpassat för bedömningar inom ramen för Vattendirektivet. Enligt bedömningsgrunden bör minst 5 stationer användas för klassning av ekologisk status. Dessa stationer måste dock inte ligga inom samma vattenförekomst, utan kan vara lokaliserade i angränsande vattenförekomster. Den ekologiska statusen för mjukbottenfauna i enskilda vattenförekomster klassas genom extrapolering med hjälp av data från närbelägna områden med liknande bottenmiljö och påverkansgrad.

    Befintlig fiskebeståndsövervakning föreslås fortlöpa för att möjliggöra uppföljning av förändringar. En utökning av antalet övervakningsområden föreslås dock för att upprätta minst ett referensområde per inre och yttre kustvattentyp. En kombination av stratifierad och slumpmässig övervakning av fiskebestånden enligt nuvarande strategi föreslås, där djupintervallen stratifieras medan stationerna slumpas ut i respektive djupintervall.

    Provfiske och provtagning för miljögiftsanalys av fisk bör samordnas till samma provtagningstillfälle. Vidare bör den modell för samfinansiering och samordning som idag tillämpas av kustlänen i Bottniska viken för övervakning av fiskbestånd, samt och miljögiftsövervakning av fisk, fortlöpa även framöver.

    De ämnen som ingår i det pågående nationella programmet för miljögifter i fisk bör mätas även i de nya föreslagna områdena. När EU:s dotterdirektiv för prioriterade ämnen är beslutat och Vattenmyndigheterna fastställt miljökvalitetsnormer för särskilda förorenande ämnen, bör en översyn göras och ytterligare ämnen som är aktuella för Bottenhavet införlivas i övervakningsprogrammet. Miljögiftsövervakning i fisk bedöms kunna mätas med ett maximalt avstånd på 75 km mellan stationsområdena. Bedömning och extrapolera mätvärdena.

    För samtliga delprogram har en grova uppskattningar av kostnader för genomförandet gjorts.

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    Samordnat Mätprogram Bottenhavet
  • 273.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Höglander, Helena
    Karlsson, Chatarina
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Huseby, Siv
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Key role of phosphorus and nitrogen in regulating cyanobacterial community composition in the northern Baltic Sea2015In: Estuarine, Coastal and Shelf Science, ISSN 0272-7714, E-ISSN 1096-0015, Vol. 164, p. 161-171Article in journal (Refereed)
    Abstract [en]

    Despite cyanobacteria being a key phytoplankton group in the Baltic Sea, the factors governing their community structure are still poorly understood. Here, we studied the occurrence of the orders Chroococcales, Oscillatoriales and Nostocales, and potentially explanatory variables at five locations in the northern Baltic Sea from June–September, 1998–2012. Cyanobacteria constituted 1–36% of the total phytoplankton biomass along the north–south gradient. In the Bothnian Bay, Chroococcales and Oscillatoriales dominated the cyanobacterial community, whereas in the Bothnian Sea and northern Baltic Proper, Nostocales was the dominant group. The dominance of Chroococcales was coupled to low salinity and low total phosphorus, whereas Oscillatoriales correlated with high total nitrogen and low salinity. Nostocales correlated to high total phosphorus, inorganic phosphorus and salinity. Chroococcales showed an increase over time in the offshore Bothnian Bay, whereas Nostocales increased in the coastal Bothnian Sea and coastal Baltic Proper. The increase of Nostocales in the coastal Bothnian Sea was explained by a rise in total phosphorus and decrease in dissolved inorganic nitrogen compared to an increase of total nitrogen and phosphorus in the coastal Baltic Proper. No significant trends were observed in the cyanobacterial community in the offshore Bothnian Sea and the offshore northern Baltic Proper. We concluded that Chroococcales may be a useful indicator for increased phosphorus levels in waters with low phosphorus concentrations, whereas Nostocales could be used as a quality indicator for increasing phosphorus concentrations in waters with low inorganic N/P ratios (&lt;20), such as in the coastal Bothnian Sea and Baltic Proper.

  • 274.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Joanna, Paczkowska
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Brugel, Sonia
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Rowe, Owen
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Figueroa, Daniela
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Kratzer, Susanne
    Stockholm University Institutionen för ekologi miljö och botanik 106 91 Stockholm.
    Marked impact of allochthonous dissolved organic matter on estuarine primary and bacterial productionManuscript (preprint) (Other academic)
  • 275.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Jurgensone, Iveta
    Rowe, Owen F.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Simonelli, Paolo
    Bignert, Anders
    Lundberg, Erik
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Karlsson, Jan
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Can Humic Water Discharge Counteract Eutrophication in Coastal Waters?2013In: PLoS ONE, ISSN 1932-6203, E-ISSN 1932-6203, Vol. 8, no 4, p. e61293-Article in journal (Refereed)
    Abstract [en]

    A common and established view is that increased inputs of nutrients to the sea, for example via river flooding, will cause eutrophication and phytoplankton blooms in coastal areas. We here show that this concept may be questioned in certain scenarios. Climate change has been predicted to cause increased inflow of freshwater to coastal areas in northern Europe. River waters in these areas are often brown from the presence of high concentrations of allochthonous dissolved organic carbon ( humic carbon), in addition to nitrogen and phosphorus. In this study we investigated whether increased inputs of humic carbon can change the structure and production of the pelagic food web in the recipient seawater. In a mesocosm experiment unfiltered seawater from the northern Baltic Sea was fertilized with inorganic nutrients and humic carbon (CNP), and only with inorganic nutrients (NP). The system responded differently to the humic carbon addition. In NP treatments bacterial, phytoplankton and zooplankton production increased and the systems turned net autotrophic, whereas the CNP-treatment only bacterial and zooplankton production increased driving the system to net heterotrophy. The size-structure of the food web showed large variations in the different treatments. In the enriched NP treatments the phytoplankton community was dominated by filamentous >20 mu m algae, while in the CNP treatments the phytoplankton was dominated by picocyanobacteria <5 mu m. Our results suggest that climate change scenarios, resulting in increased humic-rich river inflow, may counteract eutrophication in coastal waters, leading to a promotion of the microbial food web and other heterotrophic organisms, driving the recipient coastal waters to net-heterotrophy.

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  • 276.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Karlsson, Chatarina
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Hajdu, Susanna
    Stockholms universitet.
    Höglander, Helena
    Stockholms universitet.
    Skjevik, Ann-Turi
    SMHI.
    Pelagial biologi / växtplankton2010In: Havet: om miljötillståndet i svenska havsområden. 2010 / [ed] Kristina Viklund (huvudredaktör) Ulrika Brenner, Annika Tidlund, Marie Svärd, Stockholm: Naturvårdsverket, 2010, p. 32-33Chapter in book (Other academic)
  • 277.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Karlsson, Chatarina
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Huseby, Siv
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Höglander, Helena
    Mer fosfor ger mer cyanobakterier i norra Östersjön2013In: Havet, p. 51-54Article, review/survey (Other academic)
    Abstract [sv]

    I flera områden i norra Östersjön har cyanobakterierna ökat under de senaste tio till femton åren. I Bottenhavets och Egentliga Östersjöns kustområden ökar de kvävefixerande cyanobakterierna. I Bottenvikens utsjö är det den småcelliga och kolonibildande gruppen Chroococcales som blir fler. Förändringarna beror i flera fall på ökande halter av fosfor.

  • 278.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Meier, H.E. Markus
    Ripszam, Matyas
    Umeå University, Faculty of Medicine, Department of Public Health and Clinical Medicine, Occupational and Environmental Medicine.
    Rowe, Owen
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Wikner, Johan
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Haglund, Peter
    Umeå University, Faculty of Science and Technology, Department of Chemistry.
    Eilola, Kari
    Legrand, Catherine
    Figueroa, Daniela
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Paczkowska, Joanna
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Lindehoff, Elin
    Tysklind, Mats
    Umeå University, Faculty of Science and Technology, Department of Chemistry.
    Elmgren, Ragnar
    Projected future climate change and Baltic Sea ecosystem management2015In: Ambio, ISSN 0044-7447, E-ISSN 1654-7209, Vol. 44, no Suppl 3, p. S345-S356Article in journal (Refereed)
    Abstract [en]

    Climate change is likely to have large effectson the Baltic Sea ecosystem. Simulations indicate 2–4 Cwarming and 50–80 % decrease in ice cover by 2100.Precipitation may increase *30 % in the north, causingincreased land runoff of allochthonous organic matter(AOM) and organic pollutants and decreased salinity.Coupled physical–biogeochemical models indicate that, inthe south, bottom-water anoxia may spread, reducing codrecruitment and increasing sediment phosphorus release,thus promoting cyanobacterial blooms. In the north,heterotrophic bacteria will be favored by AOM, whilephytoplankton production may be reduced. Extra trophiclevels in the food web may increase energy losses andconsequently reduce fish production. Future managementof the Baltic Sea must consider the effects of climatechange on the ecosystem dynamics and functions, as wellas the effects of anthropogenic nutrient and pollutant load.Monitoring should have a holistic approach, encompassingboth autotrophic (phytoplankton) and heterotrophic (e.g.,bacterial) processes.

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  • 279.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Meier, Markus
    SMHI och Stockholms universitet.
    Hur påverkas Östersjön?2010In: Sverige i nytt klimat: våtvarm utmaning / [ed] Birgitta Johansson, Stockholm: Forskningsrådet Formas, 2010, p. 117-132Chapter in book (Other academic)
  • 280. Andersson, Agneta
    et al.
    Samuelsson, Kristina
    Haecky, Pia
    Albertsson, Jan
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Changes in the pelagic microbial food web due to artificial eutrophication2006In: Aquatic Ecology, ISSN 1386-2588, E-ISSN 1573-5125, Vol. 40, no 3, p. 299-313Article in journal (Refereed)
    Abstract [en]

    The effect of nutrient enrichment on the structure and carbon flow in the pelagic microbial food web was studied in mesocosm experiments using seawater from the northern Baltic Sea. The experiments included food webs of at least four trophic levels; (1) phytoplankton-bacteria, (2) flagellates, (3) ciliates and (4) mesozooplankton. In the enriched treatments high autotrophic growth rates were observed, followed by increased heterotrophic production. The largest growth increase was due to heterotrophic bacteria, indicating that the heterotrophic microbial food web was promoted. This was further supported by increased growth of heterotrophic flagellates and ciliates in the high nutrient treatments. The phytoplankton peak in the middle of the experiments was mainly due to an autotrophic nanoflagellate, Pyramimonas sp. At the end of the experiment, the proportion of heterotrophic organisms was higher in the nutrient enriched than in the nutrient-poor treatment, indicating increased predation control of primary producers. The proportion of potentially mixotrophic plankton, prymnesiophyceans, chrysophyceans and dinophyceans, were significantly higher in the nutrient-poor treatment. Furthermore, the results indicated that the food web efficiency, defined as mesozooplankton production per basal production (primary production + bacterial production - sedimentation), decreased with increasing nutrient status, possibly due to increasing loss processes in the food web. This could be explained by promotion of the heterotrophic microbial food web, causing more trophic levels and respiration steps in the food web.

  • 281.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF). Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Selstam, Eva
    Umeå University, Faculty of Science and Technology, Department of Plant Physiology. Umeå University, Faculty of Science and Technology, Umeå Plant Science Centre (UPSC).
    Hagström, Åke
    Vertical transport of lipid in seawater1993In: Marine Ecology Progress Series, ISSN 0171-8630, E-ISSN 1616-1599, Vol. 98, no 1-2, p. 149-155Article in journal (Refereed)
    Abstract [en]

    Lipids in seawater act as solvents and transporters of lipophilic organic pollutants. To investigate a possible transport route of lipophilic pollutants, the vertical flux of lipid was quantified during an annual cycle in the northern Baltic Sea. The lipid content in both sedimenting material and different size fractions of seawater was analyzed. During the year, 8 g lipid m-2 sedimented out from the photic zone to the benthic system. The sedimentation of lipid accounted for 300 to 400 % of the average standing stock of pelagic lipid and was concentrated in the spring bloom period (April-June) when 70 % of the total lipid sedimentation occurred. About 30 % of the produced pelagic lipid settled out from the system. In seawater the lipid maximum occurred at the end of the spring bloom, shortly after nutrient depletion, indicating a stress response in the algae. Since lipid sedimentation is concentrated in the spring bloom, removal of lipophilic organic pollutants may be important during this period.

  • 282.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Tamminen, Timo
    Lehtinen, Sirpa
    Jürgens, Klaus
    Labrenz, Matthias
    Viitasalo, Markku
    The pelagic food web2017In: Biological oceanography of the Baltic sea / [ed] Pauline Snoeijs, Hendrik Schubert, Teresa Radziejewska, Dordrecht: Springer Netherlands, 2017, p. 281-332Chapter in book (Refereed)
    Abstract [en]
    1. Environmental drivers and food web structure in the pelagic zone vary from south to north in the Baltic Sea. 
    2. While nitrogen is generally the limiting nutrient for primary production in the Baltic Sea, phosphorus is the limiting nutrient in the Bothnian Bay. 
    3. In the Gulf of Bothnia the food web is to a large extent driven by terrestrial allochthonous material, while autochthonous production dominates in the other parts of the Baltic Sea. 
    4. Changes in bacterioplankton, protist and zooplankton community composition from south to north are mainly driven by salinity. 
    5. Bacteria are crucial constituents of the pelagic food web (microbial loop) and in oxygen-poor and anoxic bottom waters where they mediate element transformations. 
    6. Diatoms and dinoflagellates are the major primary producers in the pelagic zone. Summer blooms of diazotrophic (nitrogen-fixing) filamentous cyanobacteria are typical of the Baltic Sea, especially in the Baltic Sea proper and the Gulf of Finland. 
    7. The mesozooplankton (mainly copepods and cladocerans) channel energy from primary producers and the microbial food web to fish and finally to the top predators in the pelagic system (waterbirds and mammals). 
    8. Herring and sprat populations are affected by the foraging intensity of their main predator (cod), and therefore the environmental conditions that affect cod may also influence mesozooplankton due to food web effects "cascading down the food web". 
    9. Anthropogenic pressures, such as overexploitation of fish stocks, eutrophication, climate change, introduction of non-indigenous species and contamination of top predators by hazardous substances, cause changes in the pelagic food web that may have consequences for the balance and stability of the whole ecosystem.
  • 283.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Wikner, Johan
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Klimatförändringar kan leda till mindre fisk i havet2016In: Havet: om miljötillståndet i svenska havsområden. 2015/2016, Göteborg: Havs- och vattenmyndigheten , 2016, p. 25-28Chapter in book (Other academic)
  • 284.
    Andersson, Agneta
    et al.
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Wikner, Johan
    Umeå University, Faculty of Science and Technology, Umeå Marine Sciences Centre (UMF).
    Pelagisk biologi2004In: Bottniska viken: årsrapport från den marina miljöövervakningen. 2003, Skydd av havsområden gagnar fisken, Hörnefors: Umeå marina forskningscentrum (UMF) , 2004, p. 11-13Chapter in book (Refereed)
  • 285.
    Andersson, Amanda
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Hållbar utveckling i kommuner: En studie om hur kommunerna i Norr- och Västerbotten arbetar med folkhälsomål och miljökvalitetsmål2014Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    The purpose of this study was to investigate if the municipalities in Norrbotten and Västerbotten integrate the national environmental objectives and public health objectives in their work to achieve a sustainable development. Furthermore the purpose was to suggest different methods and tools to develop an integrated way of working with the objectives. Methods used were a literature study and a questionnaire, which was sent to people responsible for the objectives in each municipality. The result of this study indicates that most of the municipalities in Norrbotten and Västerbotten work extensively with environmental and public health objectives, but not in an integrated way. Methods like information in schools, closures and projects are used to implement the objectives in different municipal units. The result also indicates that public health is more considered in the municipalities than the environmental objectives. However, there was a will to expand the local work with the environmental objectives in the future. The conclusion of this study is that improvements can be done to develop and integrate public health and environmental issues in the municipalities in Norrbotten and Västerbotten. An integrated way of working with the objectives could include usage of indicators, such as unemployment or air particles, to measure the development and prioritize actions. It could also include participation in different networks to exchange experience within or between municipalities.

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  • 286.
    Andersson, Anja
    Umeå University, Faculty of Science and Technology, Department of Chemistry.
    Method development for the determination of thiols using HPLC with fluorescence detection2012Independent thesis Advanced level (professional degree), 20 credits / 30 HE creditsStudent thesis
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    fulltext
  • 287.
    Andersson, Anna
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Övervakning och uppföljning av utter i Västerbottens län2005Independent thesis Advanced level (degree of Master (One Year)), 20 credits / 30 HE creditsStudent thesis
  • 288.
    Andersson, Axel
    Umeå University, Faculty of Science and Technology, Department of Chemistry. Biomedicinprogrammet.
    Multivariate distance matching – a novel matching strategy for biomarker pattern discovery in clinical metabolomics2016Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
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    omslag
  • 289.
    Andersson, Axel
    Umeå University, Faculty of Science and Technology, Department of Physics.
    Real-Time Feedback for Agility Training: Tracking of reflective markers using a time-of-flight camera2017Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
  • 290.
    Andersson, Barbro
    Umeå University, Faculty of Science and Technology.
    Analysis of plant growth regulating substances1982Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Natural plant growth regulators (phytohormones) are a group of organic compounds which, in very small amounts, act as regulators of physiological processes in plants.Methods were developed for the analysis of phytohormones in samples from Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris (L.) Karst»). Identification of abscisic acid, 3-indoleacetic acid, gibbe-rellin Ag and the conjugate N-(3-indoleacetyl)aspartic acid was performed by GC-MS as their methyl esters. A quantitative determination of abscisic acid was made by GC-ECD and this method was also applied to anther samples of Anemone canadensis. 3-Indole-acetic acid and N-(3-indoleacetyl)aspartic acid were quantified by reversed-phase HPLC and spectrofluorimetric detection. Dichlorophene, used as a growth regulator in containerized seedlings of pine and spruce, was analysed by GC-MID in peat and paper.

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    Analysis of plant growth regulating substances
  • 291.
    Andersson, Bea Angelica
    Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
    Analysis of Selection and Genetic Drift in a Dioecious Plant: Spatial Genetic Structure and Selection in Phenotypic Traits in a Young Island Population of Silene dioica2014Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Selection and genetic drift are often competing forces in shaping genetic structure in populations. Genetic drift will often effectively cancel out the effect of selection when population sizes are small, such as in colonizing island populations. On a small island in the Skeppsvik Archipelago in northern Sweden, a newly founded population of Silene dioica has been monitored since it first established around 1993. Though inhabiting an area of merely 173 m2, the population has been shown to exhibit a genetically differentiated patch structure where closely related individuals are tightly grouped, distanced from other family groups. In this study, the effect of selection was evaluated as compared to that of genetic drift. Variation in phenotypic traits in flowers, leaves and stalks were compared to that of neutral markers, in the form of PST and FST measures, to assess a measure of what proportion of differentiation among patches in phenotypic traits could not be attributed to genetic drift. Males and females were analysed separately to obtain measures of sex specific selection. Signs of divergent and stabilizing selection were found in several traits in both males and females despite the small spatial scale and short time since colonization. Further analysis is needed to assess explanations for trait divergence among patches and direction of selection.

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  • 292.
    Andersson, Björn
    Umeå University, Faculty of Social Sciences, Department of Statistics.
    Consequences of near-unfaithfulness in a finite sample: a simulation study2010Independent thesis Advanced level (degree of Master (Two Years)), 10 credits / 15 HE creditsStudent thesis
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  • 293.
    Andersson, Björn
    et al.
    Uppsala universitet.
    Bränberg, Kenny
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    Wiberg, Marie
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    kequate: The kernel method of test equating. R package version 1.1.02012Other (Other academic)
    Abstract [en]

    Implements the kernel method of test equating using the CB, EG, SG, NEAT CE/PSE and NEC designs, supporting gaussian,logistic and uniform kernels and unsmoothed and pre-smoothed input data.

  • 294.
    Andersson, Björn
    et al.
    Uppsala universitet.
    Bränberg, Kenny
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    Wiberg, Marie
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    Performing the Kernel Method of Test Equating with the Package kequate2013In: Journal of Statistical Software, ISSN 1548-7660, E-ISSN 1548-7660, Vol. 55, no 6, p. 1-25Article in journal (Refereed)
    Abstract [en]

    In standardized testing it is important to equate tests in order to ensure that the test takers, regardless of the test version given, obtain a fair test. Recently, the kernel method of test equating, which is a conjoint framework of test equating, has gained popularity. The kernel method of test equating includes five steps: (1) pre-smoothing, (2) estimation of the score probabilities, (3) continuization, (4) equating, and (5) computing the standard error of equating and the standard error of equating difference. Here, an implementation has been made for six different equating designs: equivalent groups, single group, counter balanced, non-equivalent groups with anchor test using either chain equating or post- stratification equating, and non-equivalent groups using covariates. An R package for the kernel method of test equating called kequate is presented. Included in the package are also diagnostic tools aiding in the search for a proper log-linear model in the pre-smoothing step for use in conjunction with the R function glm.

  • 295.
    Andersson, Björn
    et al.
    Statistiska institutionen, Uppsala universitet.
    Waernbaum, Ingeborg
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    Sensitivity analysis of violations of the faithfulness assumption2014In: Journal of Statistical Computation and Simulation, ISSN 0094-9655, E-ISSN 1563-5163, Vol. 84, no 7, p. 1608-1620Article in journal (Other academic)
    Abstract [en]

    We study implications of violations of the fatihfulness condition due to parameter cancellations on estimation of the DAG skeleton. Three settings are investigated: when i) faithfulness is guaranteed ii) faithfulness is not guaranteed and iii) the parameter distributions are concentrated around unfaithfulness (near-unfaithfulness). In a simulation study the effetcs of the different settings are compared using the PC and MMPC algorithms. The results show that the performance in the faithful case is almost unchanged compared to the unrestricted case whereas there is a general decrease in performance under the near-unfaithful case as compared to the unrestricted case. The response to near-unfaithful parameterisations is similar between two algorithms, with the MMPC algorithm having higher true positive rates and the PC algorithm having lower false positive rates.

  • 296.
    Andersson, Björn
    et al.
    Beijing Normal University.
    Wiberg, Marie
    Umeå University, Faculty of Social Sciences, Umeå School of Business and Economics (USBE), Statistics.
    Item response theory observed-score kernel equating2017In: Psychometrika, ISSN 0033-3123, E-ISSN 1860-0980, Vol. 82, no 1, p. 48-66Article in journal (Refereed)
    Abstract [en]

    Item response theory (IRT) observed-score kernel equating is introduced for the non-equivalent groups with anchor test equating design using either chain equating or post-stratification equating. The equating function is treated in a multivariate setting and the asymptotic covariance matrices of IRT observed-score kernel equating functions are derived. Equating is conducted using the two-parameter and three-parameter logistic models with simulated data and data from a standardized achievement test. The results show that IRT observed-score kernel equating offers small standard errors and low equating bias under most settings considered.

  • 297.
    Andersson, Britt M.
    et al.
    Umeå University, Faculty of Science and Technology, Physics.
    Easterling, Kenneth E.
    Guo, Shi-ju
    Sundqvist, Bertil
    Umeå University, Faculty of Science and Technology, Physics.
    Electrical resistivity and critical temperature of Bi-based high-Tc superconductors to 1 GPa1990In: High Pressure Research, volumes 3 to 5: High Pressure Science and Technology: Proceedings of the 12. AIRAPT and 27. EHPRG Conference, University Paderborn 1989, London: Gordon and Breach , 1990, p. 120-122Conference paper (Refereed)
    Abstract [en]

    We have measured the electrical resistance R of a sintered, two-phase, high-TC superconductor with the nominal composition BiSrCaCu2Ox, as a function of T and p. We find d(lnR)/dp ≃ -0.06 GPa-1 at 295 K, while dTC/dp is 2.5 K/GPa for the phase with Tc ≃ 76 and 2 K/GPa for that with TC ≃ 106 K.

  • 298.
    Andersson, Britt M.
    et al.
    Umeå University, Faculty of Science and Technology, Physics.
    Easterling, Kenneth E.
    Loberg, Bengt
    Niska, John
    Sundqvist, Bertil
    Umeå University, Faculty of Science and Technology, Physics.
    High-pressure properties of high-Tc superconductor samples produced by hot isostatic pressing1990In: High Pressure Research, volumes 3 to 5: High Pressure Science and Technology: Proceedings of the 12. AIRAPT and 27. EHPRG Conference, University Paderborn 1989, London: Gordon and Breach , 1990, p. 123-126Conference paper (Refereed)
    Abstract [en]

    The electrical resistance of dense YBa2Cu3Ox and YBa2Cu4Oy produced by hot isostatic pressing has been measured vs. T and p. At 295 K we find d (ln R)/dp ≃ -0.12 and -0.09 GPa-1, respectively, with no systematic dependence on initial density. For 1-2-4, dTC/dp ≃ 5.1 K/GPa, which is ten times that of 1-2-3.

  • 299.
    Andersson, Britt M.
    et al.
    Umeå University, Faculty of Science and Technology, Physics.
    Sundqvist, Bertil
    Umeå University, Faculty of Science and Technology, Physics.
    Defects and the thermal conductivity of YBa2Cu3O7-d and YBa2Cu4O81993In: Journal of Alloys and Compounds, volume 195: Proceedings of Symposium A on High Tc Superconductors of the 1992 E-MRS Fall Conference, Strasbourg 1992, Elsevier Sequoia S.A. , 1993, p. 655-658Conference paper (Refereed)
    Abstract [en]

    We present below the first measured data for the thermal diffusivity and the thermal conductivity, λ, of dense, sintered ceramic YBa2Cu4O8 (1-2-4) as a function of temperature T between 40 and 310 K. At 300 K, λ is 6.3 Wm−1K−1, increasing with decreasing T to about 9.5 Wm−1K−1 near Tc. This T dependence is much stronger than in YBa2Cu3O7−δ (1-2-3). Only a very small enhancement is observed in λ below Tc. As in 1-2-3, λ is mainly limited by phonon scattering by defects.

  • 300.
    Andersson, Britt M.
    et al.
    Umeå University, Faculty of Science and Technology, Physics.
    Sundqvist, Bertil
    Umeå University, Faculty of Science and Technology, Physics.
    Thermal conductivity and thermal diffusivity of dense, bulk YBa2Cu4O81994In: High Temperatures - High Pressures volume 26, issue 1: Proceedings of the 13th European Conference on Thermophysical Properties (13 ECTP), Lisboa 1993, London: Pion Press , 1994, p. 53-57Conference paper (Refereed)
    Abstract [en]

    We have measured the thermal conductivity, lambda, and the thermal diffusivity, a, of dense bulk ceramic YBa2Cu4O8 (1-2-4) between 30 and 300 K. For this material lambda is about 10 W/Km near 100 K, comparable with the in-plane thermal conductivity for single crystals of the more common high-Tc material YBa2Cu3O7 (1-2-3). Also, lambda has a much stronger T dependence in 1-2-4 than in 1-2-3. We find that, for 1-2-4, lambda can be very well described by a semiclassical phonon theory, which includes phonon, electron, and boundary scattering. The difference between the present results and those for 1-2-3 can be explained mainly in terms of a smaller amount of point-defect scattering in 1-2-4 because of the stable oxygen stoichiometry of this material.

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