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As climate change and nutrient pollution intensify, understanding how millions of lakes will respond to such forcings as a global or regional collective has become urgent and yet capturing their role in Earth's system remain neither conceptually unified nor empirically constrained. Here we introduce a framework that aggregates individual lake hypsography and functional attributes into composite lakes globally, across climate zones or 1-degree Earth system grid cells. We find that globally, lake shape mirrors land rather than ocean, with shallow areas dominating. This structure reveals systematic differences between glaciated and non-glaciated regions and between colder and warmer climate zones. At the 1-degree Earth system grid cells, composite lakes group into five distinct clusters. Globally, an estimated 43% of lake volume and sediment surface area lie within the mixed layer. A composite mixed layer volume-to-sediment-surface-area ratio reveals dominant water column influence and biogeochemical sensitivities, with strong contrasts across climates and glacial histories. The proposed framework advances quantifying and understanding the collective role of lakes across spatial scales in Earth's system.

Global estimates of methane (CH4) emissions from lakes to the atmosphere rely on understanding CH4 processes at the sediment-water interface (SWI). However, in the Arctic, the variability, magnitude, and environmental drivers of CH4 production and flux across the SWI are poorly understood. Here, we estimate CH4 diffusive fluxes from the sediment into the water column in 10 lakes in Arctic Scandinavia and Svalbard using porewater modeling and mass transfer estimates, which we then compare with 60 published estimates from the Arctic to the tropics. Diffusion of CH4 in the sampled lake sediments ranged from −0.46 to 3.1 mmol m−2 day−1, which is consistent with previous reports for Arctic and boreal lakes, and lower than for temperate and tropical biomes. Methane production occurs primarily within the top ∼10 cm of sediment, indicating a biogenic origin. Random forest predictive modeling of the sampled lakes revealed that conditions promoting production and deposition of autochthonous organic carbon in Arctic lakes drive CH4 diffusion into the water column by fueling sediment CH4 production. For small lakes across biomes, determinants of the estimated CH4 flux were also best captured by climate predictors, with warmer and wetter conditions favoring ecosystem productivity and enhancing flux but also lake morphometry resulting in important regional variability in estimates. Our study emphasizes the importance of quantifying diffusive CH4 fluxes from sediments in diverse lake types to account for differences in the controls on primary production and the preservation of organic carbon across and within different biomes, to refine CH4 emission estimates in a warming climate.

Dissolved organic carbon (DOC) is a key component of coastal biogeochemical cycles, but its composition and reactivity depend on the relative contribution of autochthonous aquatic versus allochthonous terrigenous DOC (tDOC). In complex coastal waters, tDOC is commonly quantified using the bulk DOC stable carbon isotope ratio (δ13CDOC). However, several limitations can hamper the use of δ13CDOC in marine ecosystems, such as (1) the narrow and often overlapping separation of the autochthonous and allochthonous endmembers, and (2) mineralization of tDOC to dissolved inorganic carbon creates a reservoir effect such that autochthonous DOC can acquire a terrigenous-like δ13CDOC. The stable isotope ratio of non-exchangeable hydrogen in the DOC (δ2Hn) has emerged as a new tool that can potentially overcome these limitations: (1) δ2Hn has a large separation between aquatic and terrigenous endmembers (>50‰) and (2) it is not subject to reservoir effects caused by tDOC mineralization. Here, we evaluate the potential of δ2Hn obtained from solid phase-extracted dissolved organic matter (SPE-DOM), by comparing it to δ13CDOC and chromophoric DOM (CDOM) optical properties. We collected samples at a site in Southeast Asia's Sunda Shelf that experiences substantial seasonal variation in tDOC input, driven primarily by the monsoon-induced physical advection of peatland-derived tDOC. Over a 1-year monthly time series, the terrigenous fraction of DOC (fterr) determined using δ2Hn of SPE-DOM and δ13CDOC of bulk DOC was well correlated (r2 = 0.42), and there was no significant difference in fterr between the two isotope systems. In fact, δ2Hn displayed slightly stronger correlations with salinity and CDOM optical properties compared to δ13CDOC. Our results indicate that δ2Hn of SPE-DOM is effective for quantifying tDOC across coastal gradients, potentially offering greater sensitivity than δ13CDOC, and is a viable alternative in settings where δ13CDOC is inadequate.

The European Standard EN 16039:2011 provides guidelines for assessing lake hydromorphology within the Water Framework Directive and includes methods for estimating volume, mean depth, and maximum depth based on statistical models applied to data from topographic maps. We tested the predictive accuracy of these models using independently collected bathymetric data from 35 Swedish lakes. The models had no predictive power, and the maximum depth predictions were inversely correlated with the observed values. The mean absolute percent error was 46% for volume and mean depth, and 85% for maximum depth. The models are flawed and should not be used.

The temperature response of ecosystem processes is key to understand and predict impacts of climate change. This is especially true for respiration, given its high temperature sensitivity and major role in the global carbon cycle. However, similar intrinsic temperature sensitivity for respiration does not mean comparable temperature effects across ecosystems and biomes because non-temperature factors can be more important. Here we analyzed soil and sediment respiration data and found that in temperature ranges corresponding to high latitude mean temperatures, absolute respiration rates aremore sensitive to non-temperature factors than to projected direct temperature effects. However, at higher temperatures (>20 °C) the direct effect of temperature mediated by temperature sensitivity will likely be more important over changes in non-temperature factors in shaping how respiration change over time. This supports past suggestions that the relatively small projected temperature increase at low (tropical) latitudes may have a large direct impact on absolute respiration. In contrast, absolute respiration rates at high (boreal/arctic) latitudes will likely bemore sensitive on the development of the non-temperature factors than on the direct effects of the large projected temperature increase there.

Social media abstract: Respirationmay be less dependent to changes in temperature at higher than lower latitudes.

The ecology and biogeochemistry of lakes in the subarctic region are particularly sensitive to changes in the abundance and optical properties of dissolved organic matter (DOM). External input of colored DOM to these lakes is an extensively researched topic, but little is known about potential reciprocal feedbacks between the optical properties of DOM and internal microbial processes in the water. We performed 28-day dark laboratory incubation trials on water from 101 subarctic tundra lakes in northern Sweden, measuring the microbial decay of DOM and the resulting dynamics in colored (CDOM) and fluorescent (FDOM) DOM components. While losses in dissolved oxygen during the incubations corresponded to a 20% decrease in mean DOM, conversely the mean CDOM and total FDOM increased by 22% and 30%, respectively. However, the patterns in microbial transformation of the DOM were not the same in all lakes. Notably, along the gradient of increasing ambient CDOM (water brownness), the lakes showed decreased microbial production of protein-like fluorescence, lowered DOM turnover rates and decreasing bacterial growth per unit of DOM. These trends indicate that browning of subarctic lakes systematically change the way that bacteria interact with the ambient DOM pool. Our study underscores that there is no unidirectional causal link between microbial processes and DOM optical properties, but rather reciprocal dependence between the two.

Sediments of northern lakes sequester large amounts of organic carbon (OC), but direct evidence of the relative importance of their sources is lacking. We used stable isotope ratios of nonexchangeable hydrogen (δ²H_n) in topsoil, algae, and surface sediments in order to measure the relative contribution of terrestrial OC in surface sediments of 14 mountainous arctic and lowland boreal lakes in Sweden. The terrestrial contribution to the sediment OC pool was on average 66% (range 46–80) and similar between arctic and boreal lakes. Proxies for the supply of terrestrial and algal OC explained trends in the relative contribution of terrestrial OC across lakes. However, the data suggest divergent predominant sources for terrestrial OC of sediments in Swedish lakes, with dissolved matter dominating in lowland boreal lakes and particulate OC in mountainous arctic lakes.

Lake sediments constitute an important compartment in the carbon cycle of lakes, by burying carbon over geological timescales and by production and emission of greenhouse gases. The degradation of organic carbon (OC) in lake sediments is linked to both temperature and oxygen (O-2), but the interactive nature of this regulation has not been studied in lake sediments in a quantitative way. We present the first systematic investigation of the effects of temperature on the apparent respiratory quotient (RQ, i.e., the molar ratio between carbon dioxide (CO2) production and O-2 consumption) in two contrasting lake sediments. Laboratory incubations of sediment cores of a humic lake and an eutrophic lake across a 1-21 degrees C temperature gradient over 157days revealed that both CO2 production and O-2 consumption were positively, exponentially, and similarly dependent on temperature. The apparent RQ differed significantly between the lake sediments (0.630.26 and 0.990.28 in the humic and the eutrophic lake, respectively; meanSD) and was significantly and positively related to temperature. The O-2 penetration depth into the sediment varied by a factor of 2 over the 1-21 degrees C temperature range and was significantly, negatively, and similarly related to temperature in both lake sediments. Accordingly, increasing temperature may influence the overall extent of OC degradation in lake sediments by limiting O-2 supply to aerobic microbial respiration to the topmost sediment layer, resulting in a concomitant shift to less effective anaerobic degradation pathways. This suggests that temperature may represent a key controlling factor of the OC burial efficiency in lake sediments.

Lakes are globally significant sources of CO₂ to the atmosphere. However, there are few temporally resolved records of lake CO₂ concentrations and long-term patterns are poorly characterized. We evaluated annual trends in the partial pressure of CO₂ (pCO₂) based on chemical measurements from 31 Adirondack Lakes taken monthly over an 18 year period. All lakes were supersaturated with CO₂ and were sources of CO₂ to the atmosphere. There were significant pCO₂ trends in 29% of lakes. The median magnitude of significant positive trends was 32.1 µatm yr⁻¹. Overall, 52% of lakes had pCO₂ trends greater than those reported for the atmosphere and ocean. Significant trends in lake pCO₂ were attributable to regional recovery from acid deposition and changing patterns of ice cover. These results illustrate that lake pCO₂ can respond rapidly to environmental change, but the lack of significant trend in 71% of lakes indicates substantial lake-to-lake variation in magnitude of response.

Methane-derived carbon can be important in both benthic and pelagic food webs. Either generated in the anaerobic layers of the sediment or in the anaerobic hypolimnion of stratified eutrophic lakes, methane is an excellent carbon source for aerobic methanotrophic bacteria. The very negative methane δ¹³C-signal in the methanotrophic biomass provides an excellent opportunity to trace the use of methane-derived carbon in food webs. We studied carbon sources of benthic bacteria in a range of Swedish lakes with different inputs of terrestrial organic carbon and indigenous primary production. We analyzed the ¹³C:¹²C ratios in phospholipid-derived fatty acids, which serve as biomarkers for specific groups of Bacteria. We demonstrate that methane is an important carbon source for sediment bacteria, not only for the methanotrophic community but also for the non-methanotrophic heterotrophic bacteria. This most likely indirect utilization of isotopically highly depleted methane masks the stable isotope signatures for terrestrial input and local primary production in the heterotrophic bacterial community.