Umeå universitets logga

umu.sePublikationer
Ändra sökning
Länk till posten
Permanent länk

Direktlänk
Pya Arnqvist, Natalya, universitetslektor
Alternativa namn
Publikationer (10 of 44) Visa alla publikationer
Arnqvist, P., Sjöstedt de Luna, S. & Pya Arnqvist, N. (2025). fdaMocca: an R package for model-based clustering for functional data with covariates. In: Christos H. Skiadas; Charilaos Skiadas (Ed.), Quantitative methods and data analysis in applied demography - volume 2: data, models, risk and surveys (pp. 95-108). Cham: Springer
Öppna denna publikation i ny flik eller fönster >>fdaMocca: an R package for model-based clustering for functional data with covariates
2025 (Engelska)Ingår i: Quantitative methods and data analysis in applied demography - volume 2: data, models, risk and surveys / [ed] Christos H. Skiadas; Charilaos Skiadas, Cham: Springer, 2025, s. 95-108Kapitel i bok, del av antologi (Refereegranskat)
Abstract [en]

This paper presents an R package, fdaMocca, that provides routines for model-based functional cluster analysis for functional data with optional covariates. The idea is to cluster functional subjects (often called functional objects) into homogenous groups by using spline smoothers (for functional data) together with scalar covariates. The spline coefficients and the covariates are modelled as a multivariate Gaussian mixture model, where the number of mixtures corresponds to the number of clusters. The parameters of the model are estimated by maximizing the observed mixture likelihood via an EM algorithm. The usefulness of fdaMocca and its clustering methods is illustrated on a functional data set with covariates from 6400 annual seasonal patterns of varved lake sediment from Lake Kassjön (Northern Sweden). Each varve contains information about the weather the year the varve was formed and thus may be used to reconstruct past climate.

Ort, förlag, år, upplaga, sidor
Cham: Springer, 2025
Serie
The Springer Series on Demographic Methods and Population Analysis, ISSN 1877-2560, E-ISSN 2215-1990 ; 58
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-242579 (URN)10.1007/978-3-031-82279-7_9 (DOI)9783031822780 (ISBN)9783031822810 (ISBN)9783031822797 (ISBN)
Tillgänglig från: 2025-08-05 Skapad: 2025-08-05 Senast uppdaterad: 2025-08-12Bibliografiskt granskad
Jiang, Y. & Pya Arnqvist, N. (2025). Functional regression with shape constraints. In: Germán Aneiros; Enea G. Bongiorno; Aldo Goia; Marie Hušková (Ed.), New trends in functional statistics and related fields: . Paper presented at IWFOS 2025: International Workshop on Functional and Operatorial Statistics, Novara, Italy, June 25-27, 2025 (pp. 277-284). Springer Nature
Öppna denna publikation i ny flik eller fönster >>Functional regression with shape constraints
2025 (Engelska)Ingår i: New trends in functional statistics and related fields / [ed] Germán Aneiros; Enea G. Bongiorno; Aldo Goia; Marie Hušková, Springer Nature, 2025, s. 277-284Konferensbidrag, Publicerat paper (Refereegranskat)
Abstract [en]

Functional regression is a dynamic research field within functional data analysis, with a wide range of applications across different areas. This paper aims to expand the existing framework of shape-constrained generalized additive models to functional generalized additive models with shape constraints. We introduce an extension of the shape-constrained P-spline (SCOP-spline) approach to a broad class of functional regression models with various shape constraints. Our framework includes parametric and a mixture of constrained and unconstrained smooth effects of functional and scalar covariates. Estimation and inference in this framework build upon the shape-constrained generalized additive models, enabling the use of wellestablished, robust, and flexible procedures. The described methods are implemented in the user-friendly R package scam. Simulation shows performance improvements when modelling with the proposed approach compared to the unconstrained method.

Ort, förlag, år, upplaga, sidor
Springer Nature, 2025
Serie
Contributions to Statistics, ISSN 1431-1968, E-ISSN 2628-8966
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik; datalogi
Identifikatorer
urn:nbn:se:umu:diva-239328 (URN)10.1007/978-3-031-92383-8_34 (DOI)978-3-031-92385-2 (ISBN)978-3-031-92382-1 (ISBN)978-3-031-92383-8 (ISBN)
Konferens
IWFOS 2025: International Workshop on Functional and Operatorial Statistics, Novara, Italy, June 25-27, 2025
Tillgänglig från: 2025-05-28 Skapad: 2025-05-28 Senast uppdaterad: 2025-05-28Bibliografiskt granskad
Kussainov, A. S., Arnqvist, P., Pya Arnqvist, N., Saduyev, N., Kalikulov, O., Yerezhep, N., . . . Baktoraz, A. (2025). ³He neutron detector with Android smartphone integration. Physical Sciences and Technology, 12(3-4), 80-88
Öppna denna publikation i ny flik eller fönster >>³He neutron detector with Android smartphone integration
Visa övriga...
2025 (Engelska)Ingår i: Physical Sciences and Technology, ISSN 2409-6121, Vol. 12, nr 3-4, s. 80-88Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

We have developed a homemade neutron flux detection module with 3He tube hot-swap capability and control-rich Android software interface. Real-time data analysis is done by a smartphone with Android application interfaced with the detector via a USB cable. This setup can be used as a neutron and gamma ray background detector or as a compact, mobile 3He tubes calibration tool making it a cheap and easy-to-use alternative for the stationary setups. A fast neutron detection algorithm was implemented as a set of Java scripts and tested for real-time signal analysis. The modular structure of the device allows easy deployment and customization with further software development and regular upgrades. The current prototype was tested at the Nuclear Physics Research Institute under different neutron flux intensity conditions from the VVR-K water-cooled research reactor. Its simplicity and significantly lower cost, compared with conventional detector equipment, make it valuable for easy repetitive tasks with medium requirements for precision and neutron flux intensities.

Ort, förlag, år, upplaga, sidor
al-Farabi Kazakh National University, 2025
Nyckelord
³He detector, proportional counter, android application, functional clustering, neutron capture, USB interface.
Nationell ämneskategori
Fysik
Forskningsämne
kärnfysik
Identifikatorer
urn:nbn:se:umu:diva-248131 (URN)10.26577/phst20251228 (DOI)
Tillgänglig från: 2026-01-05 Skapad: 2026-01-05 Senast uppdaterad: 2026-01-08Bibliografiskt granskad
Pya Arnqvist, N., Sjöstedt de Luna, S. & Abramowicz, K. (2024). fiberLD: Fiber Length Determination. R package version 0.1-8.
Öppna denna publikation i ny flik eller fönster >>fiberLD: Fiber Length Determination. R package version 0.1-8
2024 (Engelska)Övrigt (Övrigt vetenskapligt)
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-220032 (URN)
Anmärkning

Routines for estimating tree fiber (tracheid) length distributions in the standing tree based on increment core samples. Two types of data can be used with the package, increment core data measured by means of an optical fiber analyzer (OFA), e.g. such as the Kajaani Fiber Lab, or measured by microscopy. Increment core data analyzed by OFAs consist of the cell lengths of both cut and uncut fibres (tracheids) and fines (such as ray parenchyma cells) without being able to identify which cells are cut or if they are fines or fibres. The microscopy measured data consist of the observed lengths of the uncut fibres in the increment core. A censored version of a mixture of the fine and fiber length distributions is proposed to fit the OFA data, under distributional assumptions (Svensson et al., 2006) <doi:10.1111/j.1467-9469.2006.00501.x>. The package offers two choices for the assumptions of the underlying density functions of the true fiber (fine) lenghts of those fibers (fines) that at least partially appear in the increment core, being the generalized gamma and the log normal densities.

Tillgänglig från: 2024-01-26 Skapad: 2024-01-26 Senast uppdaterad: 2024-01-26Bibliografiskt granskad
Pya Arnqvist, N. (2024). On some extensions of shape-constrained generalized additive modelling in R.
Öppna denna publikation i ny flik eller fönster >>On some extensions of shape-constrained generalized additive modelling in R
2024 (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
Abstract [en]

Regression models that incorporate smooth functions of predictor variables to explain the relationships with a response variable have gained widespread usage and proved successful in various applications. By incorporating smooth functions of predictor variables, these models can capture complex relationships between the response and predictors while still allowing for interpretation of the results. In situations where the relationships between a response variable and predictors are explored, it is not uncommon to assume that these relationships adhere to certain shape constraints. Examples of such constraints include monotonicity and convexity. The scam package for R has become a popular package to carry out the full fitting of exponential family generalized additive modelling with shape restrictions on smooths. The paper aims to extend the existing framework of shape-constrained generalized additive models (SCAM) to accommodate smooth interactions of covariates, linear functionals of shape-constrained smooths and incorporation of residual autocorrelation. The methods described in this paper are implemented in the recent version of the package scam, available on the Comprehensive R Archive Network (CRAN).

Nyckelord
smoothing, shape constraints, interaction, smooth ANOVA, regression, linear functionals of smooths
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-222486 (URN)10.48550/arXiv.2403.09438 (DOI)
Forskningsfinansiär
Vetenskapsrådet, 2022-04190
Tillgänglig från: 2024-03-19 Skapad: 2024-03-19 Senast uppdaterad: 2024-03-19
Pya Arnqvist, N. (2024). scam: Shape constrained additive models. R package version 1.2-15.
Öppna denna publikation i ny flik eller fönster >>scam: Shape constrained additive models. R package version 1.2-15
2024 (Engelska)Övrigt (Övrigt vetenskapligt)
Abstract [en]

scam provides functions for generalized additive modelling under shape constraints on the component functions of the linear predictor of the GAM. Models can contain multiple shape constrained and unconstrained terms as well as bivariate smooths with double or single monotonicity.

Nyckelord
smoothing, generalized additive model, shape constraints, penalized regression splines
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-220033 (URN)
Tillgänglig från: 2024-01-26 Skapad: 2024-01-26 Senast uppdaterad: 2024-01-26Bibliografiskt granskad
Shcherbak, D. & Pya Arnqvist, N. (2023). Geometry on optimal problem.
Öppna denna publikation i ny flik eller fönster >>Geometry on optimal problem
2023 (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
Abstract [en]

We introduce an algorithm which can be directly used to feasible and optimum search in linear programming. Starting from an initial point the algorithm iteratively moves a point in a direction to resolve the violated constraints. At the same time, it ensures that previously fulfilled constraints are not breached during this process. The method is based on geometrical properties of n-dimensional space and can be used on any type of linear constraints (>, =, ≥), moreover it can be used when the feasible region is non-full-dimensional.

Nationell ämneskategori
Beräkningsmatematik
Forskningsämne
matematik
Identifikatorer
urn:nbn:se:umu:diva-217575 (URN)10.48550/arXiv.2312.01775 (DOI)
Tillgänglig från: 2023-12-09 Skapad: 2023-12-09 Senast uppdaterad: 2024-08-26Bibliografiskt granskad
Pya Arnqvist, N., Arnqvist, P. & Sjöstedt de Luna, S. (2022). fdaMocca: Model-Based Clustering for Functional Data with Covariates. R package version 0.1-1.
Öppna denna publikation i ny flik eller fönster >>fdaMocca: Model-Based Clustering for Functional Data with Covariates. R package version 0.1-1
2022 (Engelska)Övrigt (Övrigt vetenskapligt)
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-198596 (URN)
Projekt
Functional data analysis and spatial statistics
Tillgänglig från: 2022-08-15 Skapad: 2022-08-15 Senast uppdaterad: 2022-08-23Bibliografiskt granskad
Pya Arnqvist, N., Sjöstedt de Luna, S. & Abramowicz, K. (2022). fiberLD: Fiber Length Determination. R package version 0.1-7.
Öppna denna publikation i ny flik eller fönster >>fiberLD: Fiber Length Determination. R package version 0.1-7
2022 (Engelska)Övrigt (Övrigt vetenskapligt)
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-198597 (URN)
Tillgänglig från: 2022-08-15 Skapad: 2022-08-15 Senast uppdaterad: 2022-08-23Bibliografiskt granskad
Pya Arnqvist, N. (2022). scam: Shape constrained additive models. R package version 1.2-13.
Öppna denna publikation i ny flik eller fönster >>scam: Shape constrained additive models. R package version 1.2-13
2022 (Engelska)Övrigt (Övrigt vetenskapligt)
Nationell ämneskategori
Sannolikhetsteori och statistik
Forskningsämne
statistik
Identifikatorer
urn:nbn:se:umu:diva-199286 (URN)
Tillgänglig från: 2022-09-12 Skapad: 2022-09-12 Senast uppdaterad: 2022-09-12Bibliografiskt granskad
Organisationer

Sök vidare i DiVA

Visa alla publikationer