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2024 (English) In: STAR Protocols, E-ISSN 2666-1667, Vol. 5, no 4, article id 103415Article in journal (Refereed) Published
Abstract [en] Here, we present a protocol for evaluating type VI secretion system (T6SS)dependent fitness of the oral symbiont A. aphrophilus using biofilm competition assays and metaproteomics. We describe steps for designing T6SS-specific mutants. We then detail procedures for using them in competition assays with the pathobiont A.actinomycetemcomitans and in biofilm models, analyzing metaproteomes to assess the impact of the T6SS on multiple pathobionts. The biofilm modelis designed to mimic the oral plaque ecosystem and includes seven species. For complete details on the use and execution of this protocol, please refer to Oscarsson et al.
Place, publisher, year, edition, pages
Cell Press, 2024
Keywords Bacteriology, Microbial flora, Microbial interactions
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Research subject
Microbiology
Identifiers urn:nbn:se:umu:diva-231244 (URN) 10.1016/j.xpro.2024.103415 (DOI) 001344680300001 () 39460940 (PubMedID) 2-s2.0-85207348303 (Scopus ID)
Funder Swedish Research Council, 2017-01198, 2021-03528Region Västerbotten, 7002667Umeå UniversityKarolinska Institute
2024-10-282024-10-282025-03-05 Bibliographically approved