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Johansson, Alexandra C.
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Publications (10 of 50) Show all publications
Öberg, R., Sil, T. B., Johansson, A. C., Malyshev, D., Landström, L., Johansson, S., . . . Andersson, P. O. (2024). UV-induced spectral and morphological changes in bacterial spores for inactivation assessment. Journal of Physical Chemistry B, 128(7), 1638-1646
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2024 (English)In: Journal of Physical Chemistry B, ISSN 1520-6106, E-ISSN 1520-5207, Vol. 128, no 7, p. 1638-1646Article in journal (Refereed) Published
Abstract [en]

The ability to detect and inactivate spore-forming bacteria is of significance within, for example, industrial, healthcare, and defense sectors. Not only are stringent protocols necessary for the inactivation of spores but robust procedures are also required to detect viable spores after an inactivation assay to evaluate the procedure’s success. UV radiation is a standard procedure to inactivate spores. However, there is limited understanding regarding its impact on spores’ spectral and morphological characteristics. A further insight into these UV-induced changes can significantly improve the design of spore decontamination procedures and verification assays. This work investigates the spectral and morphological changes to Bacillus thuringiensis spores after UV exposure. Using absorbance and fluorescence spectroscopy, we observe an exponential decay in the spectral intensity of amino acids and protein structures, as well as a logistic increase in dimerized DPA with increased UV exposure on bulk spore suspensions. Additionally, using micro-Raman spectroscopy, we observe DPA release and protein degradation with increased UV exposure. More specifically, the protein backbone’s 1600–1700 cm–1 amide I band decays slower than other amino acid-based structures. Last, using electron microscopy and light scattering measurements, we observe shriveling of the spore bodies with increased UV radiation, alongside the leaking of core content and disruption of proteinaceous coat and exosporium layers. Overall, this work utilized spectroscopy and electron microscopy techniques to gain new understanding of UV-induced spore inactivation relating to spore degradation and CaDPA release. The study also identified spectroscopic indicators that can be used to determine spore viability after inactivation. These findings have practical applications in the development of new spore decontamination and inactivation validation methods.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2024
National Category
Microbiology Analytical Chemistry Other Physics Topics
Identifiers
urn:nbn:se:umu:diva-221378 (URN)10.1021/acs.jpcb.3c07062 (DOI)001167255400001 ()38326108 (PubMedID)2-s2.0-85185157140 (Scopus ID)
Funder
Swedish Research Council, 2019-04016The Kempe Foundations, JCK-1916.2Swedish Armed Forces, 470-A400823
Note

Published as part of The Journal of Physical Chemistry B virtual special issue “Advances in Cellular Biophysics”.

Available from: 2024-02-21 Created: 2024-02-21 Last updated: 2025-09-30Bibliographically approved
Silva de Oliveira, V., Silander, I., Rutkowski, L., Johansson, A. C., Sobon, G., Axner, O., . . . Foltynowicz, A. (2021). Double-Resonance Spectroscopy of Methane Using a Comb Probe. In: 2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021: . Paper presented at 2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021, Munich, Germany, 21-25 June 2021.. IEEE Lasers and Electro-Optics Society
Open this publication in new window or tab >>Double-Resonance Spectroscopy of Methane Using a Comb Probe
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2021 (English)In: 2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021, IEEE Lasers and Electro-Optics Society, 2021Conference paper, Oral presentation with published abstract (Refereed)
Abstract [en]

Optical-optical double resonance (OODR) spectroscopy is a powerful tool for the experimental assignment of highly-excited molecular states, which in turn is needed for verification of the accuracy of theoretical predictions of high-temperature spectra observed in exoplanets and in combustion environments. Previous implementations of OODR used either continuous wave (cw) lasers, which limit the number of transitions that can be detected, or pulsed lasers, which limit the spectral resolution. Recently, we demonstrated OODR with a cw pump and a frequency comb probe and applied it to the detection and assignment of methane transitions in the 3ν 3 ← ν 3 range with sub-Doppler resolution over 200 cm -1 of bandwidth [1]. The pump [see Fig. 1(a) ] was a 1 W 3.3m idler of a cw optical parametric oscillator (cw-OPO), stabilized to the Lamb dip in a selected CH 4 transition in the ν 3 band using a signal from a reference cell. The probe was an amplified fully-stabilized Er:fiber comb ( f rep = 250 MHz), whose center wavelength was shifted to 1.67m using a soliton self-frequency shift fiber (SSSF). The sample of pure CH 4 was contained in an 80-cm-long single-pass cell cooled by liquid nitrogen. The probe spectra were detected using a Fourier transform spectrometer (FTS) with comb-mode-limited resolution [2] , and the final interleaved spectra had 2 MHz sampling point spacing. Figure 1(b) shows the 3ν 3 ← ν 3 R(1) transition at 6046.36008(5) cm -1 , detected with the pump on the ν 3 R(0) line. We measured, fit and assigned 36 probe transitions with the pump tuned to 9 different transitions. Figure 1(d) shows a comparison of the probe transition wavenumbers to predictions from the TheoReTS database [3] , demonstrating agreement within 1 cm -1.

Place, publisher, year, edition, pages
IEEE Lasers and Electro-Optics Society, 2021
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-189083 (URN)10.1109/CLEO/Europe-EQEC52157.2021.9542713 (DOI)000728078301040 ()2-s2.0-85117570057 (Scopus ID)9781665418768 (ISBN)
Conference
2021 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2021, Munich, Germany, 21-25 June 2021.
Available from: 2021-11-04 Created: 2021-11-04 Last updated: 2023-09-05Bibliographically approved
Foltynowicz, A., Rutkowski, L., Silander, I., Johansson, A. C., Silva de Oliveira, V., Axner, O., . . . Lehmann, K. K. (2021). Measurement and assignment of double-resonance transitions to the 8900-9100- cm-1 levels of methane. Physical Review A: covering atomic, molecular, and optical physics and quantum information, 103(2), Article ID 022810.
Open this publication in new window or tab >>Measurement and assignment of double-resonance transitions to the 8900-9100- cm-1 levels of methane
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2021 (English)In: Physical Review A: covering atomic, molecular, and optical physics and quantum information, ISSN 2469-9926, E-ISSN 2469-9934, Vol. 103, no 2, article id 022810Article in journal (Refereed) Published
Abstract [en]

Optical-optical double-resonance spectroscopy with a continuous wave pump and frequency comb probe allows measurement of sub-Doppler transitions to highly excited molecular states over a wide spectral range with high frequency accuracy. We report on assessment and characterization of sub-Doppler double-resonance transitions in methane measured using a 3.3-μm continuous wave optical parametric oscillator as a pump and a 1.67-μm frequency comb as a probe. The comb spectra were recorded using a Fourier transform spectrometer with comb-mode-limited resolution. With the pump tuned to nine different transitions in the ν3 fundamental band, we detected 36 ladder-type transitions to the 3ν3 overtone band region, and 18 V-type transitions to the 2ν3 overtone band. We describe in detail the experimental approach and the pump stabilization scheme, which currently limits the frequency accuracy of the measurement. We present the data analysis procedure used to extract the frequencies and intensities of the probe transitions for parallel and perpendicular relative pump-probe polarization. We compare the center frequencies and relative intensities of the ladder-type transitions to theoretical predictions from the TheoReTS and ExoMol line lists, demonstrating good agreement with TheoReTS.

Place, publisher, year, edition, pages
American Physical Society, 2021
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-182118 (URN)10.1103/PhysRevA.103.022810 (DOI)000617037900004 ()2-s2.0-85100896234 (Scopus ID)
Funder
Knut and Alice Wallenberg Foundation, KAW 2015.0159Swedish Research Council, 2016-03593The Kempe Foundations, JCK 1317.1
Available from: 2021-04-09 Created: 2021-04-09 Last updated: 2023-09-05Bibliographically approved
Foltynowicz, A., Rutkowski, L., Silander, I., Johansson, A. C., Silva de Oliveira, V., Axner, O., . . . Lehmann, K. K. (2021). Sub-Doppler Double-Resonance Spectroscopy of Methane Using a Frequency Comb Probe. Physical Review Letters, 126(6), Article ID 063001.
Open this publication in new window or tab >>Sub-Doppler Double-Resonance Spectroscopy of Methane Using a Frequency Comb Probe
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2021 (English)In: Physical Review Letters, ISSN 0031-9007, E-ISSN 1079-7114, Vol. 126, no 6, article id 063001Article in journal (Refereed) Published
Abstract [en]

We report the first measurement of sub-Doppler molecular response using a frequency comb by employing the comb as a probe in optical-optical double-resonance spectroscopy. We use a 3.3 μm continuous wave pump and a 1.67 μm comb probe to detect sub-Doppler transitions to the 2ν3 and 3ν3 bands of methane with ∼1.7 MHz center frequency accuracy. These measurements provide the first verification of the accuracy of theoretical predictions from highly vibrationally excited states, needed to model the high-temperature spectra of exoplanets. Transition frequencies to the 3ν3 band show good agreement with the TheoReTS line list.

National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-180999 (URN)10.1103/PhysRevLett.126.063001 (DOI)000617044900003 ()2-s2.0-85100872137 (Scopus ID)
Available from: 2021-03-05 Created: 2021-03-05 Last updated: 2023-09-05Bibliographically approved
Silva de Oliveira, V., Silander, I., Rutkowski, L., Johansson, A. C., Soboń, G., Axner, O., . . . Foltynowicz, A. (2021). Sub-doppler optical-optical double-resonance spectroscopy of methane using a frequency comb probe. In: OSA Optical Sensors and Sensing Congress 2021 (AIS, FTS, HISE, SENSORS, ES): . Paper presented at Applied Industrial Spectroscopy, AIS 2021 - Part of Optical Sensors and Sensing Congress 2021, Washington, DC, USA, July 19-23, 2021. Optical Society of America, Article ID JTu6E.2.
Open this publication in new window or tab >>Sub-doppler optical-optical double-resonance spectroscopy of methane using a frequency comb probe
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2021 (English)In: OSA Optical Sensors and Sensing Congress 2021 (AIS, FTS, HISE, SENSORS, ES), Optical Society of America, 2021, article id JTu6E.2Conference paper, Published paper (Refereed)
Abstract [en]

We use a 3.3 µm high-power continuous wave pump and a 1.67 µm comb probe to detect transitions in the 3ν3 ← ν3 range of methane with sub-Doppler resolution over 6 THz of bandwidth. We achieve high absorption sensitivity for the comb probe using an enhancement cavity and a Fourier transform spectrometer with auto-balanced detection.

Place, publisher, year, edition, pages
Optical Society of America, 2021
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-189945 (URN)10.1364/AIS.2021.JTu6E.2 (DOI)2-s2.0-85119347939 (Scopus ID)9781557528209 (ISBN)
Conference
Applied Industrial Spectroscopy, AIS 2021 - Part of Optical Sensors and Sensing Congress 2021, Washington, DC, USA, July 19-23, 2021
Funder
Knut and Alice Wallenberg Foundation, 2015.0159Swedish Research Council, 2016-03593
Note

Funding sponsor: Foundation for Polish Science/Fundacja na rzecz Nauki Polskiej (POIR.04.04.00-00-434D/17-00)

Available from: 2021-11-26 Created: 2021-11-26 Last updated: 2021-11-26Bibliographically approved
Foltynowicz, A., Rutkowski, L., Silander, I., Johansson, A. C., Silva de Oliveira, V., Axner, O., . . . Lehmann, K. K. (2020). Sub-doppler double-resonance spectroscopy of methane using a frequency comb probe. In: Conference on Lasers and Electro-Optics: . Paper presented at CLEO: Science and Innovations, CLEO_SI 2020, Washington, DC, United States, 10–15 May 2020.. Optica Publishing Group (formerly OSA), Article ID STu4N.1.
Open this publication in new window or tab >>Sub-doppler double-resonance spectroscopy of methane using a frequency comb probe
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2020 (English)In: Conference on Lasers and Electro-Optics, Optica Publishing Group (formerly OSA) , 2020, article id STu4N.1Conference paper, Oral presentation with published abstract (Refereed)
Abstract [en]

We use a 3.3 µm continuous wave optical parametric oscillator as a pump and a 1.67 µm frequency comb as a probe to record 36 sub-Doppler double-resonance transitions in the 3v3 band of methane (including 26 previously unreported) with ~1.5 MHz center frequency accuracy.

Place, publisher, year, edition, pages
Optica Publishing Group (formerly OSA), 2020
Series
Optics InfoBase Conference Papers, E-ISSN 21622701
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-212628 (URN)10.1364/CLEO_SI.2020.STu4N.1 (DOI)2-s2.0-85095440596 (Scopus ID)9781943580767 (ISBN)
Conference
CLEO: Science and Innovations, CLEO_SI 2020, Washington, DC, United States, 10–15 May 2020.
Funder
Knut and Alice Wallenberg Foundation, 2015.0159Swedish Research Council, 2015-04374Swedish Research Council, 2016-03593
Available from: 2023-09-04 Created: 2023-09-04 Last updated: 2023-11-15Bibliographically approved
Foltynowicz, A., Rutkowski, L., Silander, I., Johansson, A. C., Silva de Oliveira, V., Axner, O., . . . Lehmann, K. K. (2020). Sub-doppler double-resonance spectroscopy of methane using a frequency comb probe. In: 2020 conference on lasers and electro-optics (CLEO): proceedings. Paper presented at 2020 Conference on Lasers and Electro-Optics, CLEO 2020, San Jose, 10-15 May 2020. IEEE conference proceedings, Article ID 9192344.
Open this publication in new window or tab >>Sub-doppler double-resonance spectroscopy of methane using a frequency comb probe
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2020 (English)In: 2020 conference on lasers and electro-optics (CLEO): proceedings, IEEE conference proceedings, 2020, article id 9192344Conference paper, Published paper (Refereed)
Abstract [en]

We use a 3.3 μm continuous wave optical parametric oscillator as a pump and a 1.67 μm frequency comb as a probe to record 36 sub-Doppler double-resonance transitions in the 3v3 band of methane (including 26 previously unreported) with ∼1.5 MHz center frequency accuracy.

Place, publisher, year, edition, pages
IEEE conference proceedings, 2020
Series
Conference on Lasers and Electro-Optics, ISSN 2160-8989, E-ISSN 1092-8081
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-215766 (URN)2-s2.0-85091667718 (Scopus ID)9781943580767 (ISBN)9781728144184 (ISBN)
Conference
2020 Conference on Lasers and Electro-Optics, CLEO 2020, San Jose, 10-15 May 2020
Funder
Knut and Alice Wallenberg Foundation, 2015.0159Swedish Research Council, 2015-04374Swedish Research Council, 2016-03593
Available from: 2023-11-15 Created: 2023-11-15 Last updated: 2023-11-15Bibliographically approved
Johansson, A. C., Rutkowski, L., Maslowski, P., Filipsson, A., Hausmaninger, T., Zhao, G., . . . Foltynowicz, A. (2019). Precise comb-based fourier transform spectroscopy for line parameter retrieval. In: 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference (CLEO/EUROPE-EQEC): . Paper presented at Conference on Lasers and Electro-Optics Europe / European Quantum Electronics Conference (CLEO/Europe-EQEC), Munich, GERMANY, JUN 23-27, 2019.. Institute of Electrical and Electronics Engineers (IEEE), Article ID 8872655.
Open this publication in new window or tab >>Precise comb-based fourier transform spectroscopy for line parameter retrieval
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2019 (English)In: 2019 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference (CLEO/EUROPE-EQEC), Institute of Electrical and Electronics Engineers (IEEE), 2019, article id 8872655Conference paper, Published paper (Refereed)
Abstract [en]

Accurate parameters of molecular transitions are needed for data analysis in many applications, ranging from atmospheric research to astrophysics and determination of fundamental constants. Optical frequency comb Fourier transform spectroscopy (OFC-FTS) is particularly well-suited for high-precision measurements of broadband molecular spectra. From these spectra, the parameters of individual transitions - all measured simultaneously under the same experimental conditions - can be determined. We use a mechanical OFC-FTS spectrometer with sub-nominal resolution [1, 2] to perform precise broadband measurements of entire molecular bands of CO2 using either direct absorption spectroscopy or cavity-enhanced complex refractive index spectroscopy (CE-CRIS) [3] and we extract line parameters for line shapes beyond the Voigt profile.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2019
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-187341 (URN)10.1109/CLEOE-EQEC.2019.8872655 (DOI)000630002700957 ()2-s2.0-85074627170 (Scopus ID)978-1-7281-0469-0 (ISBN)
Conference
Conference on Lasers and Electro-Optics Europe / European Quantum Electronics Conference (CLEO/Europe-EQEC), Munich, GERMANY, JUN 23-27, 2019.
Available from: 2021-09-13 Created: 2021-09-13 Last updated: 2023-08-28Bibliographically approved
Rutkowski, L., Foltynowicz, A., Schmidt, F. M., Johansson, A. C., Khodabakhsh, A., Kyuberis, A. A., . . . Tennyson, J. (2018). An experimental water line list at 1950 K in the 6250–6670 cm−1 region. Journal of Quantitative Spectroscopy and Radiative Transfer, 205, 213-219
Open this publication in new window or tab >>An experimental water line list at 1950 K in the 6250–6670 cm−1 region
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2018 (English)In: Journal of Quantitative Spectroscopy and Radiative Transfer, ISSN 0022-4073, E-ISSN 1879-1352, Vol. 205, p. 213-219Article in journal (Refereed) Published
Abstract [en]

An absorption spectrum of (H2O)-O-16 at 1950 K is recorded in a premixed methane/air flat flame using a cavity-enhanced optical frequency comb-based Fourier transform spectrometer. 2417 absorption lines are identified in the 6250-6670 cm(-1) region with an accuracy of about 0.01 cm(-1). Absolute line intensities are retrieved using temperature and concentration values obtained by tunable diode laser absorption spectroscopy. Line assignments are made using a combination of empirically known energy levels and predictions from the new POKAZATEL variational line list. 2030 of the observed lines are assigned to 2937 transitions, once blends are taken into account. 126 new energy levels of (H2O)-O-16 are identified. The assigned transitions belong to 136 bands and span rotational states up to J = 27.

Keywords
Water, Absorption, Fourier transform spectroscopy, Optical cavity, Frequency comb, Calculations
National Category
Atom and Molecular Physics and Optics Astronomy, Astrophysics and Cosmology
Identifiers
urn:nbn:se:umu:diva-141519 (URN)10.1016/j.jqsrt.2017.10.016 (DOI)000417665000023 ()2-s2.0-85033699494 (Scopus ID)
Available from: 2017-11-06 Created: 2017-11-06 Last updated: 2023-03-24Bibliographically approved
Johansson, A. C., Rutkowski, L., Filipsson, A., Hausmaninger, T., Zhao, G., Axner, O. & Foltynowicz, A. (2018). Broadband calibration-free cavity-enhanced complex refractive index spectroscopy using a frequency comb. Optics Express, 26(16), 20633-20648
Open this publication in new window or tab >>Broadband calibration-free cavity-enhanced complex refractive index spectroscopy using a frequency comb
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2018 (English)In: Optics Express, E-ISSN 1094-4087, Vol. 26, no 16, p. 20633-20648Article in journal (Refereed) Published
Abstract [en]

We present broadband cavity-enhanced complex refractive index spectroscopy (CE-CRIS), a technique for calibration-free determination of the complex refractive index of entire molecular bands via direct measurement of transmission modes of a Fabry-Perot cavity filled with the sample. The measurement of the cavity transmission spectrum is done using an optical frequency comb and a mechanical Fourier transform spectrometer with sub-nominal resolution. Molecular absorption and dispersion spectra (corresponding to the imaginary and real parts of the refractive index) are obtained from the cavity mode broadening and shift retrieved from fits of Lorentzian profiles to the individual cavity modes. This method is calibration-free because the mode broadening and shift are independent of the cavity parameters such as the length and mirror reflectivity. In this first demonstration of broadband CE-CRIS we measure simultaneously the absorption and dispersion spectra of three combination bands of CO2 in the range between 1525 nm and 1620 nm and achieve good agreement with theoretical models. This opens up for precision spectroscopy of the complex refractive index of several molecular bands simultaneously. 

Place, publisher, year, edition, pages
Optical Society of America, 2018
National Category
Atom and Molecular Physics and Optics
Identifiers
urn:nbn:se:umu:diva-151397 (URN)10.1364/OE.26.020633 (DOI)000440803600079 ()30119372 (PubMedID)2-s2.0-85051244198 (Scopus ID)
Funder
Swedish Research Council, 2016-03593Swedish Research Council, 2015-04374Knut and Alice Wallenberg Foundation, KAW 2015.0159
Available from: 2018-09-04 Created: 2018-09-04 Last updated: 2023-03-23Bibliographically approved
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