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Huseby, Siv
Publications (10 of 16) Show all publications
Andersson, A., Huseby, S., Ahlgren, J., Eriksson, K. I. & Brugel, S. (2025). Eutrofiering och närsalter i Bottniska viken: ett ekosystem i förändring. Stockholm: Naturvårdsverket
Open this publication in new window or tab >>Eutrofiering och närsalter i Bottniska viken: ett ekosystem i förändring
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2025 (Swedish)Report (Other (popular science, discussion, etc.))
Abstract [sv]

Här presenteras resultaten från forskningsprojektet ”Eutrofiering och närsalter iBottniska viken - Ett ekosystem i förändring”. Projektet är ett av fyra syntesprojektsom genomförts inom forskningssatsningen Avloppsvatten och övergödning.

Med de fyra syntesarbeten ville Naturvårdsverket och Havs- och vattenmyndighetenfå sammanfattad och analyserad kunskapsläge och kunskapsbehovinom områdena avloppsvatten och övergödning. Det övergripande syftet medsynteserna var att bidra till policyutveckling inom hållbar vattenhantering så attvi uppnår miljömålen på lång sikt och att miljöns tillstånd förbättras. Utlysningenvar inriktad på tre områden varav ett var om övergödning i kust och hav i Bottniskaviken.

Projektet har finansierats med medel från Naturvårdsverkets miljöforskningsanslag.

Rapporten har skrivits av Agneta Andersson, Siv Huseby, Joakim Ahlgren,Karolina Eriksson och Sonia Brugel från Umeå universitet.

Rapporten har granskats för vetenskaplig kvalitet av Jens Fölster (SLU) samtför praktisk relevans av Lars Åkesson (Havs- och vattenmyndigheten), Anneli Sedin(Länsstyrelsen i Västerbotten) samt Kerstin Rosén Nilsson (Naturvårdsverket).

Författarna svarar för rapportens innehåll.

Place, publisher, year, edition, pages
Stockholm: Naturvårdsverket, 2025. p. 100
Series
Rapport - Naturvårdsverket, ISSN 0282-7298 ; 7178
National Category
Environmental Sciences
Identifiers
urn:nbn:se:umu:diva-236839 (URN)978-91-620-7178-3 (ISBN)
Available from: 2025-03-24 Created: 2025-03-24 Last updated: 2025-09-16Bibliographically approved
Andersson, A., Zhao, L., Brugel, S., Figueroa, D. & Huseby, S. (2023). Metabarcoding vs Microscopy - comparison of methods to monitor phytoplankton communities. ACS - ES & T Water, 3(8), 2671-2680
Open this publication in new window or tab >>Metabarcoding vs Microscopy - comparison of methods to monitor phytoplankton communities
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2023 (English)In: ACS - ES & T Water, E-ISSN 2690-0637, Vol. 3, no 8, p. 2671-2680Article in journal (Other academic) Published
Abstract [en]

Phytoplankton are used worldwide to monitor environmental status in aquatic systems. Long-time series of microscopy-analyzed phytoplankton are available from many monitoring stations. The microscopy-method is however time consuming and has short-comings. DNA metabarcoding has been suggested as an alternative method, but the consistency between different methods need further investigation. We performed a comparative study of microscopy and metabarcoding analyzing micro- and nanophytoplankton. For metabarcoding, 25-1000 ml seawater were filtered, DNA extracted and the 18S and 16S rRNA gene amplicons sequenced. For microscopy, based on the Utermöhl method we evaluated the use of three metrics: abundance, biovolume and carbon biomass. At the genus, species, and unidentified taxa level, metabarcoding generally showed higher taxonomic diversity than microscopy, and diversity was already captured at the lowest filtration volume tested, 25 ml. Metabarcoding and microscopy displayed relatively similar distribution pattern at the group level. The results showed that the relative abundances of the 18S rRNA amplicon at the group level best fitted the microscopy carbon biomass metric. The results are promising for implementing DNA metabarcoding as a complement to microscopy in phytoplankton monitoring, especially if databases would be improved and group level indexes could be applied to classify the environmental state of water bodies.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2023
Keywords
Sampling volume, diversity, carbon biomass, gene abundance, group/class-level consistency
National Category
Oceanography, Hydrology and Water Resources
Identifiers
urn:nbn:se:umu:diva-207745 (URN)10.1021/acsestwater.3c00176 (DOI)001033834200001 ()2-s2.0-85166755712 (Scopus ID)
Note

Originally included in thesis in manuscript form. 

Available from: 2023-05-02 Created: 2023-05-02 Last updated: 2025-09-24Bibliographically approved
Huseby, S. & Wikner, J. (2018). Bacterioplankton growth. Helcom
Open this publication in new window or tab >>Bacterioplankton growth
2018 (English)Report (Other academic)
Abstract [en]

Bacterioplankton growth rate is an indicator of the decomposition of organic matter and thereby trophic status of the Sea. The bacterioplankton metabolism accounts for about half of the mineralization of organic matter and thereby pelagic oxygen consumption.

The bacterioplankton growth rate in deep waters indicates good trophic status in the off-shore Bothnian Bay and Bothnian Sea. Deep water growth rates were 67 % higher than at corresponding depths in the Atlantic Ocean, lacking excess enrichment. The decline that has earlier been reported has now ceased. During the last few years the growth rates has increased some and there is now no significant trends in any of the studied basins.

Place, publisher, year, edition, pages
Helcom, 2018. p. 4
Keywords
marine, status, bacteria, Baltic Sea, trends
National Category
Microbiology
Research subject
environmental science
Identifiers
urn:nbn:se:umu:diva-154376 (URN)
Available from: 2018-12-17 Created: 2018-12-17 Last updated: 2021-06-03Bibliographically approved
Huseby, S. (2017). Naturtypsbestämning av utsjöstationer i Bottniska viken. Göteborg: Havs- och vattenmyndigheten
Open this publication in new window or tab >>Naturtypsbestämning av utsjöstationer i Bottniska viken
2017 (Swedish)Report (Other academic)
Abstract [sv]

Fyra utsjöstationer, som ingår i den nationella miljöövervakningen i Bottniskaviken, har i denna undersökning naturtypsbestämts enligt art- och habitatdirektivets naturtyper och EUNIS/HUB. Stationerna provtogs med Van Veen huggare och den taxonomiska analysen utfördes på lab. För utsjö finns tre möjliga Natura 2000-naturtyper: 1110 sandbankar, 1170 rev och 1180 bubbelstrukturer. Ingen av de fyra stationerna passade beskrivningen av några av dessa tre möjligheter och klassades därmed inte som naturtyp enligt habitatdirektivet. Alla stationer hade lerigt sediment (>90%) med inslag av lite sand, silt eller noduler. Vid alla stationer dominerade amphipod-arterna Monoporeia affinis och/eller Pontoporeia femorata och stationerna bedömdes som ABH3N1 baltisk afotisk lerigt sediment dominerad av Monoporeia affinis och/ eller Pontoporeia femorata.

Abstract [en]

Four offshore monitoring stations in the Gulf of Bothnia were in this study classified according to the Habitat Directive and EUNIS/ HUB. The stations were sampled with Van Veen grab and later taxonomically analyzed in the laboratory. For offshore stations there are three possible Natura2000 types: 1110 sandbanks, 1170 reefs and 1180 submarine structures made by leaking gases. None of the stations could fit the descriptions of any of these Natura2000 habitat types. The sediment at all four stations was mostly clay (>90%) with elements of sand and silt and ferromanganese concretions. At all stations the amphipod species Monoporeia affinis and/or Pontoporeia femorata dominated the biomass. The EUNIS/HELCOM HUB classification for all stations was ABH3N1 Baltic aphotic muddy sediment dominated by Monoporeia affinis and/or Pontoporeia femorata.

Place, publisher, year, edition, pages
Göteborg: Havs- och vattenmyndigheten, 2017. p. 17
Series
Havs- och vattenmyndighetens rapport ; 2017:17
Keywords
miljöövervakning, naturtypsbestämning, Natura2000, EUNIS/HUB, Bottniska viken
National Category
Ecology Environmental Sciences
Research subject
environmental science
Identifiers
urn:nbn:se:umu:diva-143704 (URN)9789187967658 (ISBN)
Available from: 2018-01-08 Created: 2018-01-08 Last updated: 2020-06-10Bibliographically approved
Huseby, S. (2016). Pelagial biologi/bakterieplankton. In: Havet: om miljötillståndet i svenska havsområden. 2015/2016 (pp. 62-62). Naturvårdsverket, Havsmiljöinstitutet och Havs- och vattenmyndigheten
Open this publication in new window or tab >>Pelagial biologi/bakterieplankton
2016 (Swedish)In: Havet: om miljötillståndet i svenska havsområden. 2015/2016, Naturvårdsverket, Havsmiljöinstitutet och Havs- och vattenmyndigheten , 2016, p. 62-62Chapter in book (Other academic)
Place, publisher, year, edition, pages
Naturvårdsverket, Havsmiljöinstitutet och Havs- och vattenmyndigheten, 2016
Series
Havet, ISSN 1654-6741 ; 2015/2016
Keywords
miljö, Bottniska viken, bakterieplankton
National Category
Ecology Environmental Sciences Oceanography, Hydrology and Water Resources
Research subject
biology, Environmental Science
Identifiers
urn:nbn:se:umu:diva-143801 (URN)978-91-982291-3-4 (ISBN)978-91-87967-12-2 (ISBN)
Projects
svensk miljöövervakning
Available from: 2018-01-10 Created: 2018-01-10 Last updated: 2018-06-09Bibliographically approved
Höglander, H., Skjevik, A.-T., Karlsson, C. & Huseby, S. (2016). Pelagial biologi/växtplankton. In: Havet: om miljötillståndet i svenska havsområden. 2015/2016 (pp. 56-59). Naturvårdsverket; Havsmiljöinstitutet; Havs- och vattenmyndigheten
Open this publication in new window or tab >>Pelagial biologi/växtplankton
2016 (Swedish)In: Havet: om miljötillståndet i svenska havsområden. 2015/2016, Naturvårdsverket; Havsmiljöinstitutet; Havs- och vattenmyndigheten , 2016, p. 56-59Chapter in book (Other academic)
Place, publisher, year, edition, pages
Naturvårdsverket; Havsmiljöinstitutet; Havs- och vattenmyndigheten, 2016
Series
Havet, ISSN 1654-6741 ; 2015/2016
Keywords
växtplankton, miljötillstånd, marin, Bottniska viken, Östersjön
National Category
Ecology Environmental Sciences Oceanography, Hydrology and Water Resources
Research subject
environmental science
Identifiers
urn:nbn:se:umu:diva-144058 (URN)978-91-982291-3-4 (ISBN)978-91-87967-12-2 (ISBN)
Projects
svensk miljöövervakning
Available from: 2018-01-19 Created: 2018-01-19 Last updated: 2019-06-13Bibliographically approved
Andersson, A., Höglander, H., Karlsson, C. & Huseby, S. (2015). Key role of phosphorus and nitrogen in regulating cyanobacterial community composition in the northern Baltic Sea. Estuarine, Coastal and Shelf Science, 164, 161-171
Open this publication in new window or tab >>Key role of phosphorus and nitrogen in regulating cyanobacterial community composition in the northern Baltic Sea
2015 (English)In: Estuarine, Coastal and Shelf Science, ISSN 0272-7714, E-ISSN 1096-0015, Vol. 164, p. 161-171Article in journal (Refereed) Published
Abstract [en]

Despite cyanobacteria being a key phytoplankton group in the Baltic Sea, the factors governing their community structure are still poorly understood. Here, we studied the occurrence of the orders Chroococcales, Oscillatoriales and Nostocales, and potentially explanatory variables at five locations in the northern Baltic Sea from June–September, 1998–2012. Cyanobacteria constituted 1–36% of the total phytoplankton biomass along the north–south gradient. In the Bothnian Bay, Chroococcales and Oscillatoriales dominated the cyanobacterial community, whereas in the Bothnian Sea and northern Baltic Proper, Nostocales was the dominant group. The dominance of Chroococcales was coupled to low salinity and low total phosphorus, whereas Oscillatoriales correlated with high total nitrogen and low salinity. Nostocales correlated to high total phosphorus, inorganic phosphorus and salinity. Chroococcales showed an increase over time in the offshore Bothnian Bay, whereas Nostocales increased in the coastal Bothnian Sea and coastal Baltic Proper. The increase of Nostocales in the coastal Bothnian Sea was explained by a rise in total phosphorus and decrease in dissolved inorganic nitrogen compared to an increase of total nitrogen and phosphorus in the coastal Baltic Proper. No significant trends were observed in the cyanobacterial community in the offshore Bothnian Sea and the offshore northern Baltic Proper. We concluded that Chroococcales may be a useful indicator for increased phosphorus levels in waters with low phosphorus concentrations, whereas Nostocales could be used as a quality indicator for increasing phosphorus concentrations in waters with low inorganic N/P ratios (<20), such as in the coastal Bothnian Sea and Baltic Proper.

Place, publisher, year, edition, pages
Academic Press, 2015
Keywords
Cyanobacteria, Baltic Sea, Chroococcales, Oscillatoriales, Nostocales, Indicators
National Category
Ecology
Identifiers
urn:nbn:se:umu:diva-112690 (URN)10.1016/j.ecss.2015.07.013 (DOI)000367862400018 ()2-s2.0-84939176724 (Scopus ID)
Available from: 2015-12-14 Created: 2015-12-14 Last updated: 2023-03-24Bibliographically approved
Eilertsen, H. C., Huseby, S., Degerlund, M., Eriksen, G. K., Ingebrigtsen, R. A. & Hansen, E. (2014). The effect of freeze/thaw cycles on reproducibility of metabolic profiling of marine microalgal extracts using direct infusion high-resolution mass spectrometry (HR-MS). Molecules, 19(10), 16373-16380
Open this publication in new window or tab >>The effect of freeze/thaw cycles on reproducibility of metabolic profiling of marine microalgal extracts using direct infusion high-resolution mass spectrometry (HR-MS)
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2014 (English)In: Molecules, ISSN 1431-5157, E-ISSN 1420-3049, Vol. 19, no 10, p. 16373-16380Article in journal (Refereed) Published
Abstract [en]

During normal sample preparation, storage in freezers and subsequent freeze/thaw cycles are commonly introduced. The effect of freeze/thaw cycles on the metabolic profiling of microalgal extracts using HR-MS was investigated. Methanolic extracts of monocultures of Arctic marine diatoms were analyzed immediately after extraction, after seven days of storage at -78 degrees C (one freeze/thaw cycle), and after additional seven days at -20 degrees C (two freeze/thaw cycles). Repeated direct infusion high-resolution mass spectrometry analysis of microalgae extracts of the same sample showed that reproducibility was ca. 90% when a fresh (unfrozen) sample was analyzed. The overall reproducibility decreased further by ca. 10% after the first freeze/thaw-cycle, and after one more freeze/thaw cycle the reproducibility decreased further by ca. 7%. The decrease in reproducibility after freeze-thaw cycles could be attributed to sample degradation and not to instrument variability.

Place, publisher, year, edition, pages
MDPI, 2014
Keywords
metabolic profiling, metabolomics, microalgae
National Category
Analytical Chemistry Biochemistry Molecular Biology
Identifiers
urn:nbn:se:umu:diva-112692 (URN)10.3390/molecules191016373 (DOI)000344456100056 ()25314600 (PubMedID)2-s2.0-84911913575 (Scopus ID)
Available from: 2015-12-14 Created: 2015-12-14 Last updated: 2025-02-20Bibliographically approved
Huseby, S., Degerlund, M., Eriksen, G. K., Ingebrigtsen, R. A., Eilertsen, H. C. & Hansen, E. (2013). Chemical Diversity as a Function of Temperature in Six Northern Diatom Species. Marine Drugs, 11(11), 4232-4245
Open this publication in new window or tab >>Chemical Diversity as a Function of Temperature in Six Northern Diatom Species
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2013 (English)In: Marine Drugs, E-ISSN 1660-3397, Vol. 11, no 11, p. 4232-4245Article in journal (Refereed) Published
Abstract [en]

In this study, we investigate how metabolic fingerprints are related to temperature. Six common northern temperate diatoms (Attheya longicornis, Chaetoceros socialis, Chaetoceros furcellatus, Porosira glacialis, Skeletonema marinoi, and Thalassiosira gravida) were cultivated at two different temperatures, 0.5 and 8.5 °C. To exclude metabolic variations due to differences in growth rates, the growth rates were kept similar by performing the experiments under light limited conditions but in exponential growth phase. Growth rates and maximum quantum yield of photosynthesis were measured and interpreted as physiological variables, and metabolic fingerprints were acquired by high-resolution mass spectrometry. The chemical diversity varied substantially between the two temperatures for the tested species, ranging from 31% similarity for C. furcellatus and P. glacialis to 81% similarity for A. longicornis. The chemical diversity was generally highest at the lowest temperature.

Place, publisher, year, edition, pages
MDPI, 2013
Keywords
diatoms, physiology, metabolic fingerprinting, temperature
National Category
Biological Systematics
Identifiers
urn:nbn:se:umu:diva-112693 (URN)10.3390/md11114232 (DOI)000330521400007 ()24177671 (PubMedID)2-s2.0-84889251433 (Scopus ID)
Available from: 2015-12-14 Created: 2015-12-14 Last updated: 2024-07-04Bibliographically approved
Andersson, A., Karlsson, C., Huseby, S. & Höglander, H. (2013). Mer fosfor ger mer cyanobakterier i norra Östersjön. Havet, 51-54
Open this publication in new window or tab >>Mer fosfor ger mer cyanobakterier i norra Östersjön
2013 (Swedish)In: Havet, p. 51-54Article, review/survey (Other academic) Published
Abstract [sv]

I flera områden i norra Östersjön har cyanobakterierna ökat under de senaste tio till femton åren. I Bottenhavets och Egentliga Östersjöns kustområden ökar de kvävefixerande cyanobakterierna. I Bottenvikens utsjö är det den småcelliga och kolonibildande gruppen Chroococcales som blir fler. Förändringarna beror i flera fall på ökande halter av fosfor.

Place, publisher, year, edition, pages
Havsmiljöinstitutet, 2013
National Category
Environmental Sciences Ecology
Identifiers
urn:nbn:se:umu:diva-114670 (URN)
Available from: 2016-01-25 Created: 2016-01-25 Last updated: 2018-06-07Bibliographically approved
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