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Pya Arnqvist, Natalya, universitetslektor
Alternative names
Publications (10 of 44) Show all publications
Arnqvist, P., Sjöstedt de Luna, S. & Pya Arnqvist, N. (2025). fdaMocca: an R package for model-based clustering for functional data with covariates. In: Christos H. Skiadas; Charilaos Skiadas (Ed.), Quantitative methods and data analysis in applied demography - volume 2: data, models, risk and surveys (pp. 95-108). Cham: Springer
Open this publication in new window or tab >>fdaMocca: an R package for model-based clustering for functional data with covariates
2025 (English)In: Quantitative methods and data analysis in applied demography - volume 2: data, models, risk and surveys / [ed] Christos H. Skiadas; Charilaos Skiadas, Cham: Springer, 2025, p. 95-108Chapter in book (Refereed)
Abstract [en]

This paper presents an R package, fdaMocca, that provides routines for model-based functional cluster analysis for functional data with optional covariates. The idea is to cluster functional subjects (often called functional objects) into homogenous groups by using spline smoothers (for functional data) together with scalar covariates. The spline coefficients and the covariates are modelled as a multivariate Gaussian mixture model, where the number of mixtures corresponds to the number of clusters. The parameters of the model are estimated by maximizing the observed mixture likelihood via an EM algorithm. The usefulness of fdaMocca and its clustering methods is illustrated on a functional data set with covariates from 6400 annual seasonal patterns of varved lake sediment from Lake Kassjön (Northern Sweden). Each varve contains information about the weather the year the varve was formed and thus may be used to reconstruct past climate.

Place, publisher, year, edition, pages
Cham: Springer, 2025
Series
The Springer Series on Demographic Methods and Population Analysis, ISSN 1877-2560, E-ISSN 2215-1990 ; 58
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-242579 (URN)10.1007/978-3-031-82279-7_9 (DOI)9783031822780 (ISBN)9783031822810 (ISBN)9783031822797 (ISBN)
Available from: 2025-08-05 Created: 2025-08-05 Last updated: 2025-08-12Bibliographically approved
Jiang, Y. & Pya Arnqvist, N. (2025). Functional regression with shape constraints. In: Germán Aneiros; Enea G. Bongiorno; Aldo Goia; Marie Hušková (Ed.), New trends in functional statistics and related fields: . Paper presented at IWFOS 2025: International Workshop on Functional and Operatorial Statistics, Novara, Italy, June 25-27, 2025 (pp. 277-284). Springer Nature
Open this publication in new window or tab >>Functional regression with shape constraints
2025 (English)In: New trends in functional statistics and related fields / [ed] Germán Aneiros; Enea G. Bongiorno; Aldo Goia; Marie Hušková, Springer Nature, 2025, p. 277-284Conference paper, Published paper (Refereed)
Abstract [en]

Functional regression is a dynamic research field within functional data analysis, with a wide range of applications across different areas. This paper aims to expand the existing framework of shape-constrained generalized additive models to functional generalized additive models with shape constraints. We introduce an extension of the shape-constrained P-spline (SCOP-spline) approach to a broad class of functional regression models with various shape constraints. Our framework includes parametric and a mixture of constrained and unconstrained smooth effects of functional and scalar covariates. Estimation and inference in this framework build upon the shape-constrained generalized additive models, enabling the use of wellestablished, robust, and flexible procedures. The described methods are implemented in the user-friendly R package scam. Simulation shows performance improvements when modelling with the proposed approach compared to the unconstrained method.

Place, publisher, year, edition, pages
Springer Nature, 2025
Series
Contributions to Statistics, ISSN 1431-1968, E-ISSN 2628-8966
National Category
Probability Theory and Statistics
Research subject
Statistics; Computer Science
Identifiers
urn:nbn:se:umu:diva-239328 (URN)10.1007/978-3-031-92383-8_34 (DOI)978-3-031-92385-2 (ISBN)978-3-031-92382-1 (ISBN)978-3-031-92383-8 (ISBN)
Conference
IWFOS 2025: International Workshop on Functional and Operatorial Statistics, Novara, Italy, June 25-27, 2025
Available from: 2025-05-28 Created: 2025-05-28 Last updated: 2025-05-28Bibliographically approved
Kussainov, A. S., Arnqvist, P., Pya Arnqvist, N., Saduyev, N., Kalikulov, O., Yerezhep, N., . . . Baktoraz, A. (2025). ³He neutron detector with Android smartphone integration. Physical Sciences and Technology, 12(3-4), 80-88
Open this publication in new window or tab >>³He neutron detector with Android smartphone integration
Show others...
2025 (English)In: Physical Sciences and Technology, ISSN 2409-6121, Vol. 12, no 3-4, p. 80-88Article in journal (Refereed) Published
Abstract [en]

We have developed a homemade neutron flux detection module with 3He tube hot-swap capability and control-rich Android software interface. Real-time data analysis is done by a smartphone with Android application interfaced with the detector via a USB cable. This setup can be used as a neutron and gamma ray background detector or as a compact, mobile 3He tubes calibration tool making it a cheap and easy-to-use alternative for the stationary setups. A fast neutron detection algorithm was implemented as a set of Java scripts and tested for real-time signal analysis. The modular structure of the device allows easy deployment and customization with further software development and regular upgrades. The current prototype was tested at the Nuclear Physics Research Institute under different neutron flux intensity conditions from the VVR-K water-cooled research reactor. Its simplicity and significantly lower cost, compared with conventional detector equipment, make it valuable for easy repetitive tasks with medium requirements for precision and neutron flux intensities.

Place, publisher, year, edition, pages
al-Farabi Kazakh National University, 2025
Keywords
³He detector, proportional counter, android application, functional clustering, neutron capture, USB interface.
National Category
Physical Sciences
Research subject
Nuclear Physics
Identifiers
urn:nbn:se:umu:diva-248131 (URN)10.26577/phst20251228 (DOI)
Available from: 2026-01-05 Created: 2026-01-05 Last updated: 2026-01-08Bibliographically approved
Pya Arnqvist, N., Sjöstedt de Luna, S. & Abramowicz, K. (2024). fiberLD: Fiber Length Determination. R package version 0.1-8.
Open this publication in new window or tab >>fiberLD: Fiber Length Determination. R package version 0.1-8
2024 (English)Other (Other academic)
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-220032 (URN)
Note

Routines for estimating tree fiber (tracheid) length distributions in the standing tree based on increment core samples. Two types of data can be used with the package, increment core data measured by means of an optical fiber analyzer (OFA), e.g. such as the Kajaani Fiber Lab, or measured by microscopy. Increment core data analyzed by OFAs consist of the cell lengths of both cut and uncut fibres (tracheids) and fines (such as ray parenchyma cells) without being able to identify which cells are cut or if they are fines or fibres. The microscopy measured data consist of the observed lengths of the uncut fibres in the increment core. A censored version of a mixture of the fine and fiber length distributions is proposed to fit the OFA data, under distributional assumptions (Svensson et al., 2006) <doi:10.1111/j.1467-9469.2006.00501.x>. The package offers two choices for the assumptions of the underlying density functions of the true fiber (fine) lenghts of those fibers (fines) that at least partially appear in the increment core, being the generalized gamma and the log normal densities.

Available from: 2024-01-26 Created: 2024-01-26 Last updated: 2024-01-26Bibliographically approved
Pya Arnqvist, N. (2024). On some extensions of shape-constrained generalized additive modelling in R.
Open this publication in new window or tab >>On some extensions of shape-constrained generalized additive modelling in R
2024 (English)Manuscript (preprint) (Other academic)
Abstract [en]

Regression models that incorporate smooth functions of predictor variables to explain the relationships with a response variable have gained widespread usage and proved successful in various applications. By incorporating smooth functions of predictor variables, these models can capture complex relationships between the response and predictors while still allowing for interpretation of the results. In situations where the relationships between a response variable and predictors are explored, it is not uncommon to assume that these relationships adhere to certain shape constraints. Examples of such constraints include monotonicity and convexity. The scam package for R has become a popular package to carry out the full fitting of exponential family generalized additive modelling with shape restrictions on smooths. The paper aims to extend the existing framework of shape-constrained generalized additive models (SCAM) to accommodate smooth interactions of covariates, linear functionals of shape-constrained smooths and incorporation of residual autocorrelation. The methods described in this paper are implemented in the recent version of the package scam, available on the Comprehensive R Archive Network (CRAN).

Keywords
smoothing, shape constraints, interaction, smooth ANOVA, regression, linear functionals of smooths
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-222486 (URN)10.48550/arXiv.2403.09438 (DOI)
Funder
Swedish Research Council, 2022-04190
Available from: 2024-03-19 Created: 2024-03-19 Last updated: 2024-03-19
Pya Arnqvist, N. (2024). scam: Shape constrained additive models. R package version 1.2-15.
Open this publication in new window or tab >>scam: Shape constrained additive models. R package version 1.2-15
2024 (English)Other (Other academic)
Abstract [en]

scam provides functions for generalized additive modelling under shape constraints on the component functions of the linear predictor of the GAM. Models can contain multiple shape constrained and unconstrained terms as well as bivariate smooths with double or single monotonicity.

Keywords
smoothing, generalized additive model, shape constraints, penalized regression splines
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-220033 (URN)
Available from: 2024-01-26 Created: 2024-01-26 Last updated: 2024-01-26Bibliographically approved
Shcherbak, D. & Pya Arnqvist, N. (2023). Geometry on optimal problem.
Open this publication in new window or tab >>Geometry on optimal problem
2023 (English)Manuscript (preprint) (Other academic)
Abstract [en]

We introduce an algorithm which can be directly used to feasible and optimum search in linear programming. Starting from an initial point the algorithm iteratively moves a point in a direction to resolve the violated constraints. At the same time, it ensures that previously fulfilled constraints are not breached during this process. The method is based on geometrical properties of n-dimensional space and can be used on any type of linear constraints (>, =, ≥), moreover it can be used when the feasible region is non-full-dimensional.

National Category
Computational Mathematics
Research subject
Mathematics
Identifiers
urn:nbn:se:umu:diva-217575 (URN)10.48550/arXiv.2312.01775 (DOI)
Available from: 2023-12-09 Created: 2023-12-09 Last updated: 2024-08-26Bibliographically approved
Pya Arnqvist, N., Arnqvist, P. & Sjöstedt de Luna, S. (2022). fdaMocca: Model-Based Clustering for Functional Data with Covariates. R package version 0.1-1.
Open this publication in new window or tab >>fdaMocca: Model-Based Clustering for Functional Data with Covariates. R package version 0.1-1
2022 (English)Other (Other academic)
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-198596 (URN)
Projects
Functional data analysis and spatial statistics
Available from: 2022-08-15 Created: 2022-08-15 Last updated: 2022-08-23Bibliographically approved
Pya Arnqvist, N., Sjöstedt de Luna, S. & Abramowicz, K. (2022). fiberLD: Fiber Length Determination. R package version 0.1-7.
Open this publication in new window or tab >>fiberLD: Fiber Length Determination. R package version 0.1-7
2022 (English)Other (Other academic)
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-198597 (URN)
Available from: 2022-08-15 Created: 2022-08-15 Last updated: 2022-08-23Bibliographically approved
Pya Arnqvist, N. (2022). scam: Shape constrained additive models. R package version 1.2-13.
Open this publication in new window or tab >>scam: Shape constrained additive models. R package version 1.2-13
2022 (English)Other (Other academic)
National Category
Probability Theory and Statistics
Research subject
Statistics
Identifiers
urn:nbn:se:umu:diva-199286 (URN)
Available from: 2022-09-12 Created: 2022-09-12 Last updated: 2022-09-12Bibliographically approved
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