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Aripaka, Karthik
Publications (7 of 7) Show all publications
Larsson, P., Schmidt, A., Mu, Y., Zang, G., Song, J., Gajavilli, V., . . . Landström, M. (2026). Targeting oncogenic TβRI signaling inhibits androgen-independent prostate cancer growth and metastasis. Signal Transduction and Targeted Therapy, 11(1), Article ID 238.
Open this publication in new window or tab >>Targeting oncogenic TβRI signaling inhibits androgen-independent prostate cancer growth and metastasis
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2026 (English)In: Signal Transduction and Targeted Therapy, ISSN 2095-9907, E-ISSN 2059-3635, Vol. 11, no 1, article id 238Article in journal (Refereed) Published
Abstract [en]

Metastatic castration-resistant prostate cancer (mCRPC) remains the primary cause of prostate cancer-related mortality. Despite the availability of treatments, the molecular mechanisms underlying tumor invasion and metastasis are not fully understood, highlighting the need for novel therapeutic strategies. In this study, we developed fully human monoclonal antibodies (mAbs) that prevent the proteolytic cleavage of the transforming growth factor-beta (TGFβ) type I receptor (TβRI) by steric hindrance. This cleavage, mediated by the metalloprotease ADAM17 (a disintegrin and metalloprotease domain 17; also known as TACE), results in the generation of a soluble intracellular domain (TβRI-ICD) that is translocated to the nucleus of castration-resistant prostate cancer (CRPC) cells and promotes epithelial-to-mesenchymal transition (EMT), invasion, and metastasis. High levels of TGFBR1 correlated with poor survival in two independent clinical cohorts of patients with mCRPC, and a strong positive correlation between TGFBR1 and ADAM17 expression was observed. In a preclinical human orthotopic mCRPC mouse model, treatment with therapeutic mAbs effectively prevented the nuclear accumulation of TβRI-ICD, inhibited EMT, and suppressed tumor growth, invasion, and metastasis. Notably, the therapeutic effect was comparable to that of docetaxel, a current standard-of-care chemotherapy, without noticeable side effects on body weight, proximal aorta or heart function detected in immune-deficient mice. These findings suggest that targeting TβRI cleavage using specific mAbs is a novel precision medicine approach for the treatment of mCRPC. By selectively blocking the prometastatic activity of TβRI-ICD without disrupting physiological TGFβ signaling, this strategy may provide a safer and more effective alternative to existing therapies for advanced prostate cancer.

Place, publisher, year, edition, pages
Springer Nature, 2026
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:umu:diva-256906 (URN)10.1038/s41392-026-02737-x (DOI)001795192000002 ()42303991 (PubMedID)2-s2.0-105041992079 (Scopus ID)
Funder
Knut and Alice Wallenberg Foundation, KAW 2012-0090Knut and Alice Wallenberg Foundation, 2019.0345Region Västerbotten, RV 967041Region Västerbotten, 996277Region Västerbotten, 993591Region Västerbotten, 1014179Cancerforskningsfonden i Norrland, LP22-1066Cancerforskningsfonden i Norrland, LP24-2364Cancerforskningsfonden i Norrland, UmU 982061ProstatacancerförbundetSwedish Cancer Society, (23- 2902-Pj-01-HThe Kempe FoundationsSwedish Research Council, 2023-02370Swedish Research Council, 2024-03002EU, European Research Council, 787472Familjen Erling-Perssons Stiftelse, 2023-0148
Available from: 2026-07-27 Created: 2026-07-27 Last updated: 2026-07-27Bibliographically approved
Mu, Y., Wallenius, A., Zang, G., Zhu, S., Rudolfsson, S. H., Aripaka, K., . . . Landström, M. (2024). The TβRI promotes migration and metastasis through thrombospondin 1 and ITGAV in prostate cancer cells. Oncogene, 43, 3321-3334
Open this publication in new window or tab >>The TβRI promotes migration and metastasis through thrombospondin 1 and ITGAV in prostate cancer cells
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2024 (English)In: Oncogene, ISSN 0950-9232, E-ISSN 1476-5594, Vol. 43, p. 3321-3334Article in journal (Refereed) Published
Abstract [en]

TGFβ potently modifies the extracellular matrix (ECM), which is thought to favor tumor cell invasion. However, the mechanism whereby the cancer cells employ the ECM proteins to facilitate their motility is largely unknown. In this study we used RNA-seq and proteomic analysis to examine the proteins secreted by castration-resistant prostate cancer (CRPC) cells upon TGFβ treatment and found that thrombospondin 1 (THBS1) was observed to be one of the predominant proteins. The CRISPR Cas9, or siRNA techniques was used to downregulate TGFβ type I receptor (TβRI) to interfere with TGFβ signaling in various cancer cells in vitro. The interaction of ECM proteins with the TβRI in the migratory prostate cancer cells in response to TGFβ1 was demonstrated by several different techniques to reveal that THBS1 mediates cell migration by interacting with integrin subunit alpha V (ITGAV) and TβRI. Deletion of TβRI or THBS1 in cancer cells prevented their migration and invasion. THBS1 belongs to a group of tumorigenic ECM proteins induced via TGFβ signaling in CRPC cells, and high expression of THBS1 in human prostate cancer tissues correlated with the degree of malignancy. TGFβ-induced production of THBS1 through TβRI facilitates the invasion and metastasis of CRPC cells as shown in vivo xenograft animal experiments.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Cell and Molecular Biology Cancer and Oncology
Identifiers
urn:nbn:se:umu:diva-230159 (URN)10.1038/s41388-024-03165-3 (DOI)001317360000001 ()39304722 (PubMedID)2-s2.0-85204498915 (Scopus ID)
Funder
Region Västerbotten, RV 996277Region Västerbotten, RV 993591Umeå University, 982061Cancerforskningsfonden i Norrland, LP20-2236ProstatacancerförbundetSwedish Cancer Society, 23 2902 Pj 01 HSwedish Research Council, 2023-02370Familjen Erling-Perssons StiftelseCancerforskningsfonden i Norrland, LP20-2255Cancerforskningsfonden i Norrland, LP24-2369
Available from: 2024-10-02 Created: 2024-10-02 Last updated: 2025-03-25Bibliographically approved
Zymovets, V., Razghonova, Y., Rakhimova, O., Aripaka, K., Manoharan, L., Kelk, P., . . . Romani Vestman, N. (2022). Combined Transcriptomic and Protein Array Cytokine Profiling of Human Stem Cells from Dental Apical Papilla Modulated by Oral Bacteria. International Journal of Molecular Sciences, 23(9), Article ID 5098.
Open this publication in new window or tab >>Combined Transcriptomic and Protein Array Cytokine Profiling of Human Stem Cells from Dental Apical Papilla Modulated by Oral Bacteria
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2022 (English)In: International Journal of Molecular Sciences, ISSN 1661-6596, E-ISSN 1422-0067, Vol. 23, no 9, article id 5098Article in journal (Refereed) Published
Abstract [en]

Stem cells from the apical papilla (SCAP) are a promising resource for use in regenerative endodontic treatment (RET) that may be adversely affected by oral bacteria, which in turn can exert an effect on the success of RET. Our work aims to study the cytokine profile of SCAP upon exposure to oral bacteria and their supernatants—Fusobacterium nucleatum and Enterococcus faecalis—as well as to establish their effect on the osteogenic and immunogenic potentials of SCAP. Further, we target the presence of key proteins of the Wnt/β-Catenin, TGF-β, and NF-κB signaling pathways, which play a crucial role in adult osteogenic differentiation of mesenchymal stem cells, using the Western blot (WB) technique. The membrane-based sandwich immunoassay and transcriptomic analysis showed that, under the influence of F. nucleatum (both bacteria and supernatant), the production of pro-inflammatory cytokines IL-6, IL-8, and MCP-1 occurred, which was also confirmed at the mRNA level. Conversely, E. faecalis reduced the secretion of the aforementioned cytokines at both mRNA and protein levels. WB analysis showed that SCAP co-cultivation with E. faecalis led to a decrease in the level of the key proteins of the Wnt/β-Catenin and NF-κB signaling pathways: β-Catenin (p = 0.0068 *), LRP-5 (p = 0.0059 **), and LRP-6 (p = 0.0329 *), as well as NF-kB (p = 0.0034 **) and TRAF6 (p = 0.0285 *). These results suggest that oral bacteria can up-and downregulate the immune and inflammatory responses of SCAP, as well as influence the osteogenic potential of SCAP, which may negatively regulate the success of RET.

Place, publisher, year, edition, pages
MDPI, 2022
Keywords
cytokine secretion, endodontics, Fusobacterium nucleatum, IL-6, IL-8, immune response, osteogenic potential, regenerative endodontic treatment (RET), stem cells from the apical papilla (SCAP), transcriptome analysis
National Category
Dentistry Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-194879 (URN)10.3390/ijms23095098 (DOI)000799319900001 ()35563488 (PubMedID)2-s2.0-85129389469 (Scopus ID)
Funder
Swedish Research Council, 2018-05973Knut and Alice Wallenberg Foundation, 7003503Region Västerbotten, 7004361The Kempe Foundations, SMK-1966Region Västerbotten, 7003459Region Västerbotten, 7003589
Available from: 2022-06-09 Created: 2022-06-09 Last updated: 2026-04-21Bibliographically approved
Mallikarjuna, P., Tumkur Sitaram, R., Aripaka, K., Ljungberg, B. & Landström, M. (2019). Interactions between TGF-β type I receptor and hypoxia-inducible factor-alpha mediates a synergistic crosstalk leading to poor prognosis for patients with clear cell renal cell carcinoma. Cell Cycle, 18(17), 2141-2156
Open this publication in new window or tab >>Interactions between TGF-β type I receptor and hypoxia-inducible factor-alpha mediates a synergistic crosstalk leading to poor prognosis for patients with clear cell renal cell carcinoma
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2019 (English)In: Cell Cycle, ISSN 1538-4101, E-ISSN 1551-4005, Vol. 18, no 17, p. 2141-2156Article in journal (Refereed) Published
Abstract [en]

To investigate the significance of expression of HIF-1 alpha, HIF-2 alpha, and SNAIL1 proteins; and TGF-beta signaling pathway proteins in ccRCC, their relation with clinicopathological parameters and patient's survival were examined. We also investigated potential crosstalk between HIF-alpha and TGF-beta signaling pathway, including the TGF-beta type 1 receptor (ALK5-FL) and the intracellular domain of ALK5 (ALK5-ICD). Tissue samples from 154 ccRCC patients and comparable adjacent kidney cortex samples from 38 patients were analyzed for HIF-1 alpha/2 alpha, TGF-beta signaling components, and SNAIL1 proteins by immunoblot. Protein expression of HIF-1 alpha and HIF-2 alpha were significantly higher, while SNAIL1 had similar expression levels in ccRCC compared with the kidney cortex. HIF-2 alpha associated with poor cancer-specific survival, while HIF-1 alpha and SNAIL1 did not associate with survival. Moreover, HIF-2 alpha positively correlated with ALK5-ICD, pSMAD2/3, and PAI-1; HIF-1 alpha positively correlated with pSMAD2/3; SNAIL1 positively correlated with ALK5-FL, ALK5-ICD, pSMAD2/3, PAI-1, and HIF-2 alpha. Intriguingly, in vitro experiments performed under normoxic conditions revealed that ALK5 interacts with HIF-1 alpha and HIF-2 alpha, and promotes their expression and the expression of their target genes GLUT1 and CA9, in a VHL dependent manner. We found that ALK5 induces expression of HIF-1 alpha and HIF-2 alpha, through its kinase activity. Under hypoxic conditions, HIF-alpha proteins correlated with the activated TGF-beta signaling pathway. In conclusion, we reveal that ALK5 plays a pivotal role in synergistic crosstalk between TGF-beta signaling and hypoxia pathway, and that the interaction between ALK5 and HIF-alpha contributes to tumor progression.

Place, publisher, year, edition, pages
Taylor & Francis, 2019
Keywords
ALK5, clear cell renal cell carcinoma, HIF-α, SNAIL1, transforming growth factor-β
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-162654 (URN)10.1080/15384101.2019.1642069 (DOI)000478075700011 ()31339433 (PubMedID)2-s2.0-85070115115 (Scopus ID)
Available from: 2019-09-05 Created: 2019-09-05 Last updated: 2023-03-24Bibliographically approved
Aripaka, K. (2019). Studies on the biological functions of interaction between components in Wnt, TGF-β and HIF pathways for cancer progression. (Doctoral dissertation). Umeå: Umeå University
Open this publication in new window or tab >>Studies on the biological functions of interaction between components in Wnt, TGF-β and HIF pathways for cancer progression
2019 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Cancer is a disease that involves aggressive changes in the genome and aberrant signals between the living cells. Signalling pathways such as TGF-β (Transforming growth factor-β), Wnt, EGF (epidermal growth factor) and HIF (Hypoxia-inducible factor) evolved to regulate growth and development in mammals. These factors are also implicated for tumorigenesis due to failure or aberrant expression of components in these pathways. Cancer progression is a multistep process, and these steps reflect genetic alterations driving the progressive transformation of healthy human cells into highly malignant derivatives. Many types of cancers are diagnosed in the human population, such as head & neck, cervical, brain, liver, colon, prostate, uterine, breast, and renal cell cancer.

Prostate cancer is the second most common cancer and one of the foremost leading cancer-related deaths in men in the world. Aberrant Wnt3a signals promote cancer progression through the accumulation of β-Catenin. In the first paper, we have elucidated intriguing functions for Tumour necrosis factor receptor-associated factor 6 (TRAF6) as a coregulatory factor for the expression of Wnt-target genes which was confirmed in vivo by using CRISPR/Cas9 genomic editing, in zebrafish. Our data suggest that Wnt3a promotes TRAF6 interaction with Wnt components, and TRAF6 is required for gene expression of β-Catenin as well as for the Wnt-ligand co-receptor LRP5. From the in vivo studies, we elucidated positive regulation of TRAF6, which is crucial for survival and development of zebrafish. This study identifies TRAF6 as an evolutionary conserved co-regulatory protein in the Wnt pathway that also promotes the progression of prostate and colorectal cancer due to its positive effects on Wnt3a signalling.

Hypoxia is a condition due to O2 deprivation, and Hypoxia-inducible factors (HIF) transcription factors are responsible for the maintenance of oxygen homeostasis in living cells. Irregularities in these HIF transcription factors trigger pathological cellular responses for initiation and progression of malignant cancers. Renal cell carcinoma, malignant cancer arising in renal parenchyma and renal pelvis and, hypoxia plays a vital role in its progression. In the second paper, we have investigated the clinicopathological relevance of several hypoxic and TGF-β component proteins such as HIF-1α/2α/3α, TGF-β type 1 receptor (ALK5-FL) and the intracellular domain of ALK5 (ALK5-ICD), SNAI1 and PAI-1 with patient survival in clear cell renal cell carcinoma (ccRCC). We showed that HIF-2α associated with low cancer-specific survival. HIF-2α and SNAI1 positively correlated with ALK5-ICD, pSMAD2/3, PAI-1 and SNAI1 with HIF-2α; HIF-1α positively correlated with pSMAD2/3. Further, under normoxic conditions, our data suggest that ALK5 interacts with HIF-1α and HIF-2α, and promotes their expression and target genes such as GLUT1 and CA9, in a VHL dependent manner through its kinase activity. These findings shed light on the critical aspect of cross-talk between TGF-β signalling and hypoxia pathway, and also the novel finding of an interaction between ALK5 and HIF-α might provide a more in-depth understanding of mechanisms behind tumour progression

In the third paper, an ongoing study, we investigated the role of HIF-3α in the progression of Renal cell carcinoma and its association with the components of TGF-β and HIF pathways. We have observed increased levels of HIF-3α in ccRCC and pRCC (papillary renal cell carcinoma) which are associated with advanced tumour stage, metastasis and larger tumours. Also, we found HIF-3α show a significant positive association with pro-invasive gene SNAI1, which is a crucial regulator of epithelial to mesenchymal transition. TRAF6 an E3 ligase known to be a prognostic marker in RCC and we observed HIF-3α associates with TRAF6.

Place, publisher, year, edition, pages
Umeå: Umeå University, 2019. p. 94
Series
Umeå University medical dissertations, ISSN 0346-6612 ; 2060
Keywords
TRAF6, HIF-1α, HIF-2α, HIF-3α, ALK5, Wnt3a, Hypoxic signalling, TGF-β, zebrafish, β-Catenin
National Category
Cancer and Oncology Cell and Molecular Biology
Research subject
Pathology; Oncology
Identifiers
urn:nbn:se:umu:diva-164830 (URN)978-91-7855-140-8 (ISBN)
Public defence
2019-11-29, Major groove_J0, NUS, byggnad 6L, Molecular biology, Umeå, 13:00 (English)
Opponent
Supervisors
Funder
Knut and Alice Wallenberg FoundationSwedish Cancer SocietySwedish Research CouncilCancerforskningsfonden i Norrland
Available from: 2019-11-08 Created: 2019-11-04 Last updated: 2019-11-04Bibliographically approved
Aripaka, K., Gudey, S. K., Zang, G., Schmidt, A., Åhrling, S. S., Österman, L., . . . Landström, M. (2019). TRAF6 function as a novel co-regulator of Wnt3a target genes in prostate cancer. EBioMedicine, 45, 192-207
Open this publication in new window or tab >>TRAF6 function as a novel co-regulator of Wnt3a target genes in prostate cancer
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2019 (English)In: EBioMedicine, E-ISSN 2352-3964, Vol. 45, p. 192-207Article in journal (Refereed) Published
Abstract [en]

Background: Tumour necrosis factor receptor associated factor 6 (TRAF6) promotes inflammation in response to various cytokines. Aberrant Wnt3a signals promotes cancer progression through accumulation of β-Catenin. Here we investigated a potential role for TRAF6 in Wnt signaling.

Methods: TRAF6 expression was silenced by siRNA in human prostate cancer (PC3U) and human colorectal SW480 cells and by CRISPR/Cas9 in zebrafish. Several biochemical methods and analyses of mutant phenotype in zebrafish were used to analyse the function of TRAF6 in Wnt signaling.

Findings: Wnt3a-treatment promoted binding of TRAF6 to the Wnt co-receptors LRP5/LRP6 in PC3U and LNCaP cells in vitro. TRAF6 positively regulated mRNA expression of β-Catenin and subsequent activation of Wnt target genes in PC3U cells. Wnt3a-induced invasion of PC3U and SW480 cells were significantly reduced when TRAF6 was silenced by siRNA. Database analysis revealed a correlation between TRAF6 mRNA and Wnt target genes in patients with prostate cancer, and high expression of LRP5, TRAF6 and c-Myc correlated with poor prognosis. By using CRISPR/Cas9 to silence TRAF6 in zebrafish, we confirm TRAF6 as a key molecule in Wnt3a signaling for expression of Wnt target genes.

Interpretation: We identify TRAF6 as an important component in Wnt3a signaling to promote activation of Wnt target genes, a finding important for understanding mechanisms driving prostate cancer progression.

Place, publisher, year, edition, pages
Elsevier, 2019
Keywords
beta-Catenin, LRP5, Prostate cancer, TRAF6, Wnt3a, Zebrafish
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-161915 (URN)10.1016/j.ebiom.2019.06.046 (DOI)000475860000026 ()31262711 (PubMedID)2-s2.0-85067957867 (Scopus ID)
Available from: 2019-08-06 Created: 2019-08-06 Last updated: 2020-06-05Bibliographically approved
Mallikarjuna, P., Aripaka, K., Tumkur Sitaram, R., Ljungberg, B. & Landström, M.Expression and association of HIF-3α with hypoxic and TGF-β signalling components in renal cell carcinoma.
Open this publication in new window or tab >>Expression and association of HIF-3α with hypoxic and TGF-β signalling components in renal cell carcinoma
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(English)Manuscript (preprint) (Other academic)
National Category
Gastroenterology and Hepatology
Research subject
Molecular Biology; biology
Identifiers
urn:nbn:se:umu:diva-164847 (URN)
Available from: 2019-11-04 Created: 2019-11-04 Last updated: 2025-02-11
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