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Bonczek, Ondrej
Publications (3 of 3) Show all publications
Bonczek, O., Wang, L., Gnanasundram, S. V., Chen, S., Haronikova, L., Zavadil-Kokas, F. & Vojtesek, B. (2022). DNA and RNA Binding Proteins: From Motifs to Roles in Cancer. International Journal of Molecular Sciences, 23(16), Article ID 9329.
Open this publication in new window or tab >>DNA and RNA Binding Proteins: From Motifs to Roles in Cancer
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2022 (English)In: International Journal of Molecular Sciences, ISSN 1661-6596, E-ISSN 1422-0067, Vol. 23, no 16, article id 9329Article, review/survey (Refereed) Published
Abstract [en]

DNA and RNA binding proteins (DRBPs) are a broad class of molecules that regulate numerous cellular processes across all living organisms, creating intricate dynamic multilevel networks to control nucleotide metabolism and gene expression. These interactions are highly regulated, and dysregulation contributes to the development of a variety of diseases, including cancer. An increasing number of proteins with DNA and/or RNA binding activities have been identified in recent years, and it is important to understand how their activities are related to the molecular mechanisms of cancer. In addition, many of these proteins have overlapping functions, and it is therefore essential to analyze not only the loss of function of individual factors, but also to group abnormalities into specific types of activities in regard to particular cancer types. In this review, we summarize the classes of DNA-binding, RNA-binding, and DRBPs, drawing particular attention to the similarities and differences between these protein classes. We also perform a cross-search analysis of relevant protein databases, together with our own pipeline, to identify DRBPs involved in cancer. We discuss the most common DRBPs and how they are related to specific cancers, reviewing their biochemical, molecular biological, and cellular properties to highlight their functions and potential as targets for treatment.

Place, publisher, year, edition, pages
MDPI, 2022
Keywords
biomarkers, cancer, DNA/RNA binding protein, mutation, targeted treatment
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:umu:diva-199667 (URN)10.3390/ijms23169329 (DOI)000845598200001 ()36012592 (PubMedID)2-s2.0-85137671425 (Scopus ID)
Funder
Wenner-Gren Foundations, UPD2020-0047The Kempe Foundations, SMK1864European Regional Development Fund (ERDF), CZ.02.1.01/0.0/0.0/16_019/0000868Cancerforskningsfonden i Norrland, LP 21-2270
Available from: 2022-10-13 Created: 2022-10-13 Last updated: 2025-02-20Bibliographically approved
Gnanasundram, S. V., Bonczek, O., Wang, L., Chen, S. & Fåhraeus, R. (2021). P53 mRNA metabolism links with the DNA damage response. Genes, 12(9), Article ID 1446.
Open this publication in new window or tab >>P53 mRNA metabolism links with the DNA damage response
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2021 (English)In: Genes, E-ISSN 2073-4425, Vol. 12, no 9, article id 1446Article, review/survey (Refereed) Published
Abstract [en]

Human cells are subjected to continuous challenges by different genotoxic stress attacks. DNA damage leads to erroneous mutations, which can alter the function of oncogenes or tumor suppressors, resulting in cancer development. To circumvent this, cells activate the DNA damage response (DDR), which mainly involves cell cycle regulation and DNA repair processes. The tumor suppressor p53 plays a pivotal role in the DDR by halting the cell cycle and facilitating the DNA repair processes. Various pathways and factors participating in the detection and repair of DNA have been described, including scores of RNA-binding proteins (RBPs) and RNAs. It has become increasingly clear that p53’s role is multitasking, and p53 mRNA regulation plays a prominent part in the DDR. This review is aimed at covering the p53 RNA metabolism linked to the DDR and highlights the recent findings.

Place, publisher, year, edition, pages
MDPI, 2021
Keywords
ATM kinase, DNA damage response, MDM2, MRNA translation, P53, RNA metabolism, RNA-binding proteins
National Category
Cell Biology
Identifiers
urn:nbn:se:umu:diva-188154 (URN)10.3390/genes12091446 (DOI)000699608200001 ()2-s2.0-85115607311 (Scopus ID)
Available from: 2021-10-07 Created: 2021-10-07 Last updated: 2024-07-04Bibliographically approved
Haronikova, L., Bonczek, O., Zatloukalova, P., Kokas-Zavadil, F., Kucerikova, M., Coates, P. J., . . . Vojtesek, B. (2021). Resistance mechanisms to inhibitors of p53-MDM2 interactions in cancer therapy: can we overcome them?. Cellular & Molecular Biology Letters (Druk), 26(1), Article ID 53.
Open this publication in new window or tab >>Resistance mechanisms to inhibitors of p53-MDM2 interactions in cancer therapy: can we overcome them?
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2021 (English)In: Cellular & Molecular Biology Letters (Druk), ISSN 1425-8153, E-ISSN 1689-1392, Vol. 26, no 1, article id 53Article, review/survey (Refereed) Published
Abstract [en]

Since the discovery of the first MDM2 inhibitors, we have gained deeper insights into the cellular roles of MDM2 and p53. In this review, we focus on MDM2 inhibitors that bind to the p53-binding domain of MDM2 and aim to disrupt the binding of MDM2 to p53. We describe the basic mechanism of action of these MDM2 inhibitors, such as nutlin-3a, summarise the determinants of sensitivity to MDM2 inhibition from p53-dependent and p53-independent points of view and discuss the problems with innate and acquired resistance to MDM2 inhibition. Despite progress in MDM2 inhibitor design and ongoing clinical trials, their broad use in cancer treatment is not fulfilling expectations in heterogenous human cancers. We assess the MDM2 inhibitor types in clinical trials and provide an overview of possible sources of resistance to MDM2 inhibition, underlining the need for patient stratification based on these aspects to gain better clinical responses, including the use of combination therapies for personalised medicine.

Place, publisher, year, edition, pages
BioMed Central, 2021
Keywords
Combination therapy, MDM2, MDM2 inhibitor, Nutlin-3a, p53, Personalised medicine, Resistance
National Category
Biochemistry Molecular Biology Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-190854 (URN)10.1186/s11658-021-00293-6 (DOI)000730550700001 ()34911439 (PubMedID)2-s2.0-85121349878 (Scopus ID)
Available from: 2021-12-29 Created: 2021-12-29 Last updated: 2025-02-20Bibliographically approved
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