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Publications (10 of 23) Show all publications
Conca, D. V., Bano, F., Abidine, Y., Martinez, L. S., Seier, K., Svirelis, J., . . . Bally, M. (2026). Multivalency influences virus dynamics at the glycocalyx: a study of glycosaminoglycan binding in HPV16 entry. Biophysical Journal
Open this publication in new window or tab >>Multivalency influences virus dynamics at the glycocalyx: a study of glycosaminoglycan binding in HPV16 entry
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2026 (English)In: Biophysical Journal, ISSN 0006-3495, E-ISSN 1542-0086Article in journal (Refereed) Epub ahead of print
Abstract [en]

Virus attachment at the cell surface often involves the establishment of multiple ligand-receptor interactions between viral capsid proteins and glycans in the glycocalyx. Multivalency likely contributes to strengthening and fine-tuning virus dynamics at the cell surface to optimize entry. Here, we present experimental and theoretical frameworks to describe how virus attachment, detachment, and diffusion at the cell surface are modulated by multivalency. We focus on human papillomavirus 16 (HPV16), a leading cause of cervical cancer and its multivalent interactions with heparan sulfate (HS), a ubiquitous cell-surface glycan. Using single-particle tracking microscopy, we investigate the dynamic behavior of HPV16 particles interacting with multiple HS chains through a glycocalyx mimic consisting of end-tethered heparin chains that were selectively desulfated. We further establish a theoretical framework to predict the dynamic behavior of individual virus particles interacting with multiple cellular receptors and apply it to the HPV16-HS binding system using previously published association and dissociation rates of the individual capsomer-glycan bonds. Our experiments reveal that N-sulfation is essential to ensure HPV16 association and validate our theoretical prediction that at biologically relevant timescales, the lifetime of monovalent interaction primarily influences the apparent particle attachment behavior. Conversely, the nature of the sulfate group had a marginal effect on particle dissociation in the experiments, due to the great influence of multivalency on the particle’s interaction lifetime. Experiments and simulations also indicate that the mobility of HPV16 particles on heparin surfaces is highly restricted due to the relatively high affinity of the monovalent interactions, suggesting that particle motion due to the creation and rupturing of individual bonds is unlikely key in HPV16 recruitment. Together, these findings provide quantitative mechanistic insights into how virus-glycan interactions are modulated. They highlight the importance of HS chemistry in modulating early HPV16 engagement and suggest new targets against viral binding.

Place, publisher, year, edition, pages
Elsevier, 2026
Keywords
HPV16, Glycosaminoglycans, Microscopy
National Category
Molecular Biology Health Sciences
Research subject
molecular biotechnology (dept of molecular biology); Physical Biology
Identifiers
urn:nbn:se:umu:diva-256142 (URN)10.1016/j.bpj.2026.05.014 (DOI)42130085 (PubMedID)
Funder
German Research Foundation (DFG), SCHE 1552/6-1The Kempe FoundationsSwedish Research Council, 2017-04029Knut and Alice Wallenberg FoundationEU, Horizon 2020, 101027987Wenner-Gren Foundations, UPD2018-0193Swedish Research Council, 2020-06242Swedish Research Council, 2024-04375Swedish Research Council, 2024-02928German Research Foundation (DFG), SCHE 1552/3-2German Research Foundation (DFG), INST 211/ 1029-1German Research Foundation (DFG), SFB1348/2 A09
Available from: 2026-06-26 Created: 2026-06-26 Last updated: 2026-06-29
Jacquet, C., Gustafsson, R., Patel, A. K., Hansson, M., Rankin, G., Bano, F., . . . Fors Connolly, A.-M. (2025). Matrix metalloproteinase-9 mediates endothelial glycocalyx degradation and correlates with severity of hemorrhagic fever with renal syndrome. iScience, 28(9), Article ID 113262.
Open this publication in new window or tab >>Matrix metalloproteinase-9 mediates endothelial glycocalyx degradation and correlates with severity of hemorrhagic fever with renal syndrome
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2025 (English)In: iScience, E-ISSN 2589-0042, Vol. 28, no 9, article id 113262Article in journal (Refereed) Published
Abstract [en]

Hemorrhagic fever with renal syndrome (HFRS) caused by Puumala virus (PUUV) leads to vascular dysfunction contributing to acute kidney injury (AKI) and pulmonary complications. The endothelial glycocalyx (eGLX) is crucial for vascular integrity, and its degradation may exacerbate disease severity. In this study, we examined the association between eGLX degradation and renal and pulmonary dysfunction in 44 patients with laboratory-confirmed PUUV infection. We measured plasma levels of eGLX degradation markers—syndecan-1, heparan sulfate, soluble thrombomodulin, and albumin—and found that these correlated with severe AKI and the need for oxygen therapy. In vitro experiments showed that matrix metalloproteinase-9 (MMP-9) and heparanase can degrade eGLX components, but albumin at physiological concentrations can mitigate this degradation and protect endothelial barrier function. These findings indicate that eGLX degradation contributes to HFRS pathogenesis and suggest that targeting the eGLX could be a therapeutic strategy to improve patient outcomes.

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
biochemistry, cell biology, microbiology
National Category
Microbiology in the Medical Area Infectious Medicine
Identifiers
urn:nbn:se:umu:diva-243509 (URN)10.1016/j.isci.2025.113262 (DOI)001562682200001 ()2-s2.0-105013504540 (Scopus ID)
Funder
Region Västerbotten, RV-836351Region Västerbotten, RV-967545Region Västerbotten, RV-939769Region Västerbotten, RV-967783Region Västerbotten, RV-982300Åke Wiberg Foundation, M18-0031Swedish Heart Lung Foundation, 20220179The Kempe Foundations, SMK21-0014
Available from: 2025-09-10 Created: 2025-09-10 Last updated: 2025-09-10Bibliographically approved
Jayaweera, S. W., Sahin, M., Lundkvist, F., Leven, A., Tereenstra, L., Bäckman, J., . . . Olofsson, A. (2025). Misfolding of transthyretin in vivo is controlled by the redox environment and macromolecular crowding. Journal of Biological Chemistry, 301(1), Article ID 108031.
Open this publication in new window or tab >>Misfolding of transthyretin in vivo is controlled by the redox environment and macromolecular crowding
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2025 (English)In: Journal of Biological Chemistry, ISSN 0021-9258, E-ISSN 1083-351X, Vol. 301, no 1, article id 108031Article in journal (Refereed) Published
Abstract [en]

Transthyretin (TTR) amyloidosis is a progressive disorder characterized by peripheral neuropathy, autonomic dysfunction, and cardiomyopathy. The precise mechanism by which TTR misfolds and forms fibrils in vivo remains incompletely understood, posing challenges to the development of effective therapeutics. In this study, we reveal that the recently identified nonnative pathological species of TTR (NNTTR), which is enriched in the plasma of ttr-val30met gene carriers, exhibits strong amyloidogenic properties, making it a promising therapeutic target. Notably, we demonstrate that NNTTR formation is dependent on an intermolecular disulfide bond and can be promoted by oxidative conditions while being effectively suppressed by reducing agents. The formation of this disulfide bond is incompatible with the native TTR fold, thereby necessitating structural flexibility. We further show that this required flexibility can be constrained using tetramer-stabilizing drugs, thereby suppressing NNTTR formation. Interestingly, the flexibility is also hindered by macromolecular crowding, and NNTTR formation is strongly suppressed by the high protein concentration in plasma. This suppression is released upon dilution, which thus promotes NNTTR formation in areas with lower protein content, highlighting a potential link to the interstitial space, brain, and vitreous body of the eye, where TTR-amyloid is frequently observed. In summary, we demonstrate that NNTTR displays strong amyloidogenic features, underscoring its potential as a therapeutic target. We identify the redox environment and macromolecular crowding as key modulatory factors. Our findings propose a mechanistic explanation for TTR misfolding and suggest a novel therapeutic approach.

Place, publisher, year, edition, pages
American Society for Biochemistry and Molecular Biology, 2025
Keywords
amyloid, cysteine, disulfide, macromolecular crowding, redox, transthyretin
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
urn:nbn:se:umu:diva-233748 (URN)10.1016/j.jbc.2024.108031 (DOI)001394930700001 ()39615680 (PubMedID)2-s2.0-85212921836 (Scopus ID)
Funder
Swedish Research Council, 2023-02621The Kempe Foundations, JCSMK22-0105AlzheimerfondenNorrländska HjärtfondenTorsten Söderbergs stiftelse, M55/22Swedish Heart Lung FoundationRegion Västerbotten, RV-925521Region Västerbotten, RV-987878Swedish Research Council, 2019-01338
Available from: 2025-01-07 Created: 2025-01-07 Last updated: 2025-04-24Bibliographically approved
Liu, L., Bano, F., Conca, D. V., Thorsteinsson, K., Jayaweera, S. W., Avinens, D., . . . Bally, M. (2025). Recruitment of apolipoprotein E facilitates Herpes simplex virus 1 attachment and release. npj Viruses, 3(1), Article ID 13.
Open this publication in new window or tab >>Recruitment of apolipoprotein E facilitates Herpes simplex virus 1 attachment and release
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2025 (English)In: npj Viruses, E-ISSN 2948-1767, Vol. 3, no 1, article id 13Article in journal (Refereed) Published
Abstract [en]

Human apolipoprotein E (ApoE) has been shown to play important roles during primary infection and pathogenesis of several viruses. Furthermore, epidemiological studies suggest that interactions between ApoE 4 and herpes simplex virus type-1 (HSV1) could associate with higher risk of Alzheimer’s disease. Nevertheless, little is known about the ApoE-HSV1 interactions at molecular levels. Here, we investigate the effects of ApoE on HSV1 infection in vitro. Our results show that ApoE promotes HSV1 growth, which is attributed to the incorporation of ApoE into HSV1 particles. Using both biological and biophysical approaches, we conclude that ApoE-coated HSV1 demonstrates a more efficient attachment to and faster release from the cell surface. Mechanistic studies reveal that ApoE modifies HSV1 interactions with heparan sulfate, thereby modulating interactions between HSV1 and the cell surface. Overall, our results provide new insights into the roles of ApoE during HSV1 infections which may inspire future studies on Alzheimer’s disease etiology.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Neurosciences
Research subject
biological chemistry; Molecular Biology; Physical Chemistry
Identifiers
urn:nbn:se:umu:diva-237100 (URN)10.1038/s44298-025-00099-9 (DOI)001578512100001 ()40295730 (PubMedID)2-s2.0-105022282251 (Scopus ID)
Funder
AlzheimerfondenSwedish Research Council, 2017-04029Knut and Alice Wallenberg FoundationThe Kempe FoundationsNorrländska HjärtfondenSwedish Research Council, 2020-06242EU, Horizon 2020, 101027987
Available from: 2025-04-01 Created: 2025-04-01 Last updated: 2025-12-04Bibliographically approved
Bano, F., Banerji, S., Ni, T., Green, D. E., Cook, K. R., Manfield, I. W., . . . Jackson, D. G. (2025). Structure and unusual binding mechanism of the hyaluronan receptor LYVE-1 mediating leucocyte entry to lymphatics. Nature Communications, 16(1), Article ID 2754.
Open this publication in new window or tab >>Structure and unusual binding mechanism of the hyaluronan receptor LYVE-1 mediating leucocyte entry to lymphatics
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2025 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 16, no 1, article id 2754Article in journal (Refereed) Published
Abstract [en]

Immune surveillance involves the continual migration of antigen-scavenging immune cells from the tissues to downstream lymph nodes via lymphatic vessels. To enable such passage, cells first dock with the lymphatic entry receptor LYVE-1 on the outer surface of endothelium, using their endogenous hyaluronan glycocalyx, anchored by a second hyaluronan receptor, CD44. Why the process should require two different hyaluronan receptors and by which specific mechanism the LYVE-1•hyaluronan interaction enables lymphatic entry is however unknown. Here we describe the crystal structures and binding mechanics of murine and human LYVE-1•hyaluronan complexes. These reveal a highly unusual, sliding mode of ligand interaction, quite unlike the conventional sticking mode of CD44, in which the receptor grabs free hyaluronan chain-ends and winds them in through conformational re-arrangements in a deep binding cleft, lubricated by a layer of structured waters. Our findings explain the mode of action of a dedicated lymphatic entry receptor and define a distinct, low tack adhesive interaction that enables migrating immune cells to slide through endothelial junctions with minimal resistance, while clinging onto their hyaluronan glycocalyx for essential downstream functions.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Microbiology in the Medical Area Medical Life Sciences
Research subject
Physical Chemistry; Biochemistry; Molecular Biology; Computer Systems
Identifiers
urn:nbn:se:umu:diva-237101 (URN)10.1038/s41467-025-57866-8 (DOI)001449678800021 ()40113779 (PubMedID)2-s2.0-105000541469 (Scopus ID)
Funder
EU, Horizon 2020, 795605
Available from: 2025-04-01 Created: 2025-04-01 Last updated: 2026-05-18Bibliographically approved
Conca, D. V., Bano, F., Graul, M., von Wirén, J., Scherrer, L., Pace, H., . . . Bally, M. (2025). Variant-specific interactions at the plasma membrane: heparan sulfate’s impact on SARS-CoV-2 binding kinetics. Analytical Chemistry, 97(8), 4318-4328
Open this publication in new window or tab >>Variant-specific interactions at the plasma membrane: heparan sulfate’s impact on SARS-CoV-2 binding kinetics
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2025 (English)In: Analytical Chemistry, ISSN 0003-2700, E-ISSN 1520-6882, Vol. 97, no 8, p. 4318-4328Article in journal (Refereed) Published
Abstract [en]

The spread of SARS-CoV-2 led to the emergence of several variants of concern (VOCs). The spike glycoprotein, responsible for engaging the viral receptor, exhibits the highest density of mutations, suggesting an ongoing evolution to optimize viral entry. This study characterizes the bond formed by virion mimics carrying the SARS-CoV-2 spike protein and the plasma membrane of host cells in the early stages of virus entry. Contrary to the traditional analysis of isolated ligand-receptor pairs, we utilized well-defined biomimetic models and biochemical and biophysical techniques to characterize the multivalent interaction of VOCs with the complex cell membrane. We observed an overall increase in the binding affinity for newer VOCs. By progressively reducing the system complexity, we identify heparan sulfate (HS) as a main driver of this variation, with a 10-fold increase in affinity for Omicron BA.1 over that of the original strain. These results demonstrate the essential role of coreceptors, particularly HS, in the modulation of SARS-CoV-2 infection and highlight the importance of multiscale biophysical and biochemical assays that account for membrane complexity to fully characterize and understand the role of molecular components and their synergy in viral attachment and entry.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2025
National Category
Medical Biotechnology (Focus on Cell Biology, (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
urn:nbn:se:umu:diva-235998 (URN)10.1021/acs.analchem.4c04283 (DOI)001426979700001 ()39976108 (PubMedID)2-s2.0-86000386504 (Scopus ID)
Funder
The Kempe FoundationsKnut and Alice Wallenberg FoundationSwedish Research Council, 2017-04029Swedish Research Council, 2020-06242EU, Horizon 2020, 101027987
Available from: 2025-03-18 Created: 2025-03-18 Last updated: 2025-03-28Bibliographically approved
Bano, F., Soria-Martinez, L., van Bodegraven, D., Thorsteinsson, K., Brown, A. M., Fels, I., . . . Schelhaas, M. (2024). Site-specific sulfations regulate the physicochemical properties of papillomavirus–heparan sulfate interactions for entry. Science Advances, 10(40), Article ID eado8540.
Open this publication in new window or tab >>Site-specific sulfations regulate the physicochemical properties of papillomavirus–heparan sulfate interactions for entry
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2024 (English)In: Science Advances, E-ISSN 2375-2548, Vol. 10, no 40, article id eado8540Article in journal (Refereed) Published
Abstract [en]

Certain human papillomaviruses (HPVs) are etiological agents for several anogenital and oropharyngeal cancers. During initial infection, HPV16, the most prevalent cancer-causing type, specifically interacts with heparan sulfates (HSs), not only enabling initial cell attachment but also triggering a crucial conformational change in viral capsids termed structural activation. It is unknown, whether these HPV16-HS interactions depend on HS sulfation patterns. Thus, we probed potential roles of HS sulfations using cell-based functional and physicochemical assays, including single-molecule force spectroscopy. Our results demonstrate that N-sulfation of HS is crucial for virus binding and structural activation by providing high-affinity sites, and that additional 6O-sulfation is required to mechanically stabilize the interaction, whereas 2O-sulfation and 3O-sulfation are mostly dispensable. Together, our findings identify the contribution of HS sulfation patterns to HPV16 binding and structural activation and reveal how distinct sulfation groups of HS synergize to facilitate HPV16 entry, which, in turn, likely influences the tropism of HPVs.

Place, publisher, year, edition, pages
American Association for the Advancement of Science (AAAS), 2024
National Category
Biological Sciences Physical Sciences Microbiology in the medical area Cell and Molecular Biology
Research subject
Molecular Biology; biomedical laboratory science
Identifiers
urn:nbn:se:umu:diva-231077 (URN)10.1126/sciadv.ado8540 (DOI)001328825900006 ()39365863 (PubMedID)2-s2.0-85205785496 (Scopus ID)
Funder
German Research Foundation (DFG), SCHE 1552/6-1, SCHE 1552/3-2, INST 211/1029-1, SFB1348/2 A09Knut and Alice Wallenberg FoundationSwedish Research Council, 2017-04029Swedish Research Council, 2020-06242The Kempe Foundations
Available from: 2024-10-21 Created: 2024-10-21 Last updated: 2024-11-18Bibliographically approved
Prittinen, J., Zhou, X., Bano, F., Backman, L. J. & Danielson, P. (2022). Microstructured collagen films for 3D corneal stroma modelling. Connective Tissue Research, 63(5), 443-452
Open this publication in new window or tab >>Microstructured collagen films for 3D corneal stroma modelling
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2022 (English)In: Connective Tissue Research, ISSN 0300-8207, E-ISSN 1607-8438, Vol. 63, no 5, p. 443-452Article in journal (Refereed) Published
Abstract [en]

Purpose/aim: Corneal injury is a major cause of impaired vision around the globe. The fine structure of the corneal stroma plays a pivotal role in the phenotype and behavior of the embedded cells during homeostasis and healing after trauma or infection. In order to study healing processes in the cornea, it is important to create culture systems that functionally mimic the natural environment.

Materials and methods: Collagen solution was vitrified on top of a grated film to achieve thin collagen films with parallel microgrooves. Keratocytes (corneal stromal cells) were cultured on the films either as a single layer or as stacked layers of films and cells. SEM and F-actin staining were used to analyze the pattern transference onto the collagen and the cell orientation on the films. Cell viability was analyzed with MTS and live/dead staining. Keratocytes, fibroblasts, and myofibroblasts were cultured to study the pattern’s effect on phenotype.

Results: A microstructured collagen film-based culture system that guides keratocytes (stromal cells) to their native, layerwise perpendicular orientation in 3D and that can support fibroblasts and myofibroblasts was created. The films are thin and transparent enough to observe cells at least three layers deep. The cells maintain viability in 2D and 3D cultures and the films can support fibroblast and myofibroblast phenotypes.

Conclusions: The films provide an easily reproducible stroma model that maintains high cell viability and improves the preservation of the keratocyte phenotype in keratocytes that are differentiated to fibroblasts.

Place, publisher, year, edition, pages
Taylor & Francis Group, 2022
Keywords
collagen, cornea, keratocyte, stroma, Vitrigel
National Category
Ophthalmology
Identifiers
urn:nbn:se:umu:diva-190877 (URN)10.1080/03008207.2021.2007901 (DOI)000729669400001 ()34894951 (PubMedID)2-s2.0-85121425675 (Scopus ID)
Funder
Stiftelsen Kronprinsessan Margaretas arbetsnämnd för synskadade, 2013/10Swedish Society of Medicine, 504541Swedish Research Council, 2017-01138Region Västerbotten, 549761
Available from: 2021-12-29 Created: 2021-12-29 Last updated: 2024-07-02Bibliographically approved
Nadeem, A., Nagampalli, R., Toh, E., Alam, A., Myint, S. L., Heidler, T., . . . Persson, K. (2021). A tripartite cytolytic toxin formed by Vibrio cholerae proteins with flagellum-facilitated secretion. Proceedings of the National Academy of Sciences of the United States of America, 118(47), Article ID e2111418118.
Open this publication in new window or tab >>A tripartite cytolytic toxin formed by Vibrio cholerae proteins with flagellum-facilitated secretion
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2021 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 118, no 47, article id e2111418118Article in journal (Refereed) Published
Abstract [en]

Vibrio cholerae, responsible for outbreaks of cholera disease, is a highly motile organism by virtue of a single flagellum. We describe how the flagellum facilitates the secretion of three V. cholerae proteins encoded by a hitherto-unrecognized genomic island. The proteins MakA/B/E can form a tripartite toxin that lyses erythrocytes and is cytotoxic to cultured human cells. A structural basis for the cytolytic activity of the Mak proteins was obtained by X-ray crystallography. Flagellum-facilitated secretion ensuring spatially coordinated delivery of Mak proteins revealed a role for the V. cholerae flagellum considered of particular significance for the bacterial environmental persistence. Our findings will pave the way for the development of diagnostics and therapeutic strategies against pathogenic Vibrionaceae.

National Category
Biochemistry Molecular Biology
Research subject
Biochemistry
Identifiers
urn:nbn:se:umu:diva-191257 (URN)10.1073/pnas.2111418118 (DOI)000727697700014 ()34799450 (PubMedID)2-s2.0-85121209218 (Scopus ID)
Funder
Swedish Research Council, 2016-05009Swedish Research Council, 2018-02914Swedish Research Council, 2019-01720Swedish Research Council, 2007-08673The Kempe Foundations, SMK-1756.2The Kempe Foundations, SMK-1553The Kempe Foundations, JCK-1728Swedish Cancer Society, 2017-419The Kempe Foundations, SMK-1961Swedish Research Council
Available from: 2022-01-12 Created: 2022-01-12 Last updated: 2025-02-20Bibliographically approved
Szuba, A., Bano, F., Linares, G. C., Iv, F., Mavrakis, M., Richter, R. P., . . . Koenderink, G. H. (2021). Membrane binding controls ordered self-assembly of animal septins. eLIFE, 10, Article ID e63349.
Open this publication in new window or tab >>Membrane binding controls ordered self-assembly of animal septins
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2021 (English)In: eLIFE, E-ISSN 2050-084X, Vol. 10, article id e63349Article in journal (Refereed) Published
Abstract [en]

Septins are conserved cytoskeletal proteins that regulate cell cortex mechanics. The mechanisms of their interactions with the plasma membrane remain poorly understood. Here, we show by cell-free reconstitution that binding to flat lipid membranes requires electrostatic interactions of septins with anionic lipids and promotes the ordered self-assembly of fly septins into filamentous meshworks. Transmission electron microscopy reveals that both fly and mammalian septin hexamers form arrays of single and paired filaments. Atomic force microscopy and quartz crystal microbalance demonstrate that the fly filaments form mechanically rigid, 12- to 18-nm thick, double layers of septins. By contrast, C-terminally truncated septin mutants form 4-nm thin monolayers, indicating that stacking requires the C-terminal coiled coils on DSep2 and Pnut subunits. Our work shows that membrane binding is required for fly septins to form ordered arrays of single and paired filaments and provides new insights into the mechanisms by which septins may regulate cell surface mechanics.

Place, publisher, year, edition, pages
eLife Sciences Publications Ltd, 2021
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy) Biological Sciences Cell Biology Condensed Matter Physics
Identifiers
urn:nbn:se:umu:diva-216588 (URN)10.7554/elife.63349 (DOI)000648513100001 ()33847563 (PubMedID)2-s2.0-85105650161 (Scopus ID)
Available from: 2023-12-15 Created: 2023-12-15 Last updated: 2023-12-18Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-0634-7091

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