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Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
Pharmacognosy, Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.
Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Solna, Sweden.
Department of Medical Biochemistry and Microbiology, National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Umeå universitet, Medicinska fakulteten, Institutionen för molekylärbiologi (Medicinska fakulteten).ORCID-id: 0000-0003-1902-3002
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2023 (engelsk)Inngår i: G3: Genes, Genomes, Genetics, E-ISSN 2160-1836, Vol. 13, nr 10, artikkel-id jkad192Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes.

sted, utgiver, år, opplag, sider
Oxford University Press, 2023. Vol. 13, nr 10, artikkel-id jkad192
Emneord [en]
Geodia barretti, metagenome-assembled genome, Porifera, Sweden, symbionts, Tetractinellida
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Identifikatorer
URN: urn:nbn:se:umu:diva-215937DOI: 10.1093/g3journal/jkad192ISI: 001058715700001PubMedID: 37619978Scopus ID: 2-s2.0-85174513308OAI: oai:DiVA.org:umu-215937DiVA, id: diva2:1809151
Forskningsfinansiär
EU, Horizon 2020, 679849Knut and Alice Wallenberg FoundationTilgjengelig fra: 2023-11-02 Laget: 2023-11-02 Sist oppdatert: 2025-02-01bibliografisk kontrollert

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Churcher, Allison M

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