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Climate change is projected to cause elevated precipitation in northern Europe, leading to increased runoff of terrestrial matter to coastal areas. The consequences for food web production and ecosystem function remain unclear. A mesocosm experiment was performed to investigate the impacts of elevated terrestrial matter input, using a natural plankton community from the northern Baltic Sea with added young-of-the-year perch as planktivorous top consumer. Addition of terrestrial matter caused water browning and increased dissolved organic carbon and inorganic nutrient concentrations. Phytoplankton primary production showed a negative response to terrestrial matter due to decreased light availability, while heterotrophic bacterial production increased. The trophic balance, calculated as the difference between primary production and heterotrophic bacterial production, indicated that net-heterotrophy was triggered by terrestrial matter enrichment. Primary production was identified as the main basal energy source for fish. Addition of terrestrial matter reduced the food web efficiency, calculated as the ratio between fish production and basal production (primary production?+?heterotrophic bacterial production). Furthermore, stable isotope analysis of seston and fish indicated that the added terrestrial matter was not efficiently incorporated in the food web and only marginally altered the food web trophic positions. The results suggest that the main food chain consisted of phytoplankton, mesozooplankton, and fish, and that the ecosystem production was overall light driven. Under a changing climate, several negative effects can be expected, including a poorer light climate, reduced ecosystem production and net-heterotrophy. These alterations have potentially significant consequences for ecosystem functioning, fish production, and thus ecosystem services.