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A thumb-domain insertion balances processivity and fidelity in DNA polymerase ε
Umeå universitet, Medicinska fakulteten, Institutionen för medicinsk kemi och biofysik.
Umeå universitet, Medicinska fakulteten, Institutionen för medicinsk kemi och biofysik.
Umeå universitet, Medicinska fakulteten, Institutionen för medicinsk kemi och biofysik.ORCID-id: 0000-0002-8526-6224
2026 (engelsk)Inngår i: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 54, nr 6, artikkel-id gkag282Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Recent cryo-EM structures of human DNA polymerase ε (Pol ε) bound to PCNA position a Pol ε-specific thumb insertion (polymerase thumb insertion; PTI) adjacent to a PCNA protomer, suggesting a regulatory role in DNA synthesis. To define the functional contribution of this region, we generated alanine-substitution variants in the yeast Pol ε thumb domain, targeting the PTI (SLED1131–1134→AAAA; polε-SLED) and an adjacent conserved loop (PVTE1101–1104→AAAA; polε-PVTE and KPFN1096–1099→AAAA; polε-KPFN). polε-SLED displayed increased intrinsic processivity, efficient bypass of DNA secondary structures, and enhanced synthesis on long templates, consistent with reduced pausing. In contrast, a previous study extended this substitution to six amino acids, SLEDLD1131-1136→AAAAAA, and found a reversed effect, a reduced processivity, indicating that subtle perturbations in this insertion can have opposing functional consequences. polε-PVTE shifted polymerase activity toward exonuclease proofreading and was not fully rescued by PCNA on long templates, whereas polε-KPFN retained near–wild-type activity but showed increased sensitivity to secondary structures that was alleviated by PCNA. In vivo, the corresponding pol2-SLED allele caused a modest mutator phenotype, while pol2-PVTE and pol2-KPFN showed little or no increase. Together, these results indicate that the PTI fine-tunes intrinsic processivity and proofreading to maintain replication fidelity during leading-strand synthesis.

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Oxford University Press, 2026. Vol. 54, nr 6, artikkel-id gkag282
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URN: urn:nbn:se:umu:diva-252213DOI: 10.1093/nar/gkag282ISI: 001729295100001PubMedID: 41914498Scopus ID: 2-s2.0-105034704467OAI: oai:DiVA.org:umu-252213DiVA, id: diva2:2055240
Forskningsfinansiär
Swedish Research Council, 2021-01 104Swedish Cancer Society, 25 4829 PjTilgjengelig fra: 2026-04-23 Laget: 2026-04-23 Sist oppdatert: 2026-04-23bibliografisk kontrollert

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Singh, NoopurBylund, GöranJohansson, Erik

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