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Computational methods for assessing chemical risk: focusing on toxicokinetic modelling in zebrafish (danio rerio)
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Kemiska institutionen.ORCID-id: 0000-0002-2129-5210
2023 (Engelska)Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)Alternativ titel
Beräkningsmetoder för att bedöma kemikalierisker : med fokus på toxikokinetiska processer i zebrafisk (danio rerio) (Svenska)
Abstract [en]

New chemicals are constantly produced and large data gaps exist on hazards of currently used industrial chemicals, stressing the need for rapid, ethically sound and cost-efficient hazard assessment methods. Traditional methods for effect assessment based on animal testing, do not meet these requirements and thus the toxicology field has been moving towards the development of new approach methodologies which include in vitro approaches but also computational methods. The current work has mainly focused on computational tools but also employed in vitro and in vivo methodologies for the development and validation of the in silico approaches.

We firstly explored chemical variation of emerging chemicals as a basis for selecting sub-groups of per- and polyfluoroalkyl substances (PFASs) and bisphenols for Papers I and II. These compounds can be used for future testing and as case study compounds for in silico tools development. The PFASs selection showed compounds with large differences in structure and highlighted the lack of knowledge for large parts of the PFASs chemical domain. This likely is the main driver of the low predictive accuracy of some current fate models and the need for expanding their applicability domains. 

In Paper II we investigated the toxicokinetics of selected bisphenols in a commonly studied model organism, the zebrafish (Danio rerio), and developed a physiologically-based toxicokinetic model. Novel data for fish biotransformation was derived and showed lower rates than those measured in humans, providing valuable insight for both model parameterization and for chemical safety assessment using fish. The model also demonstrated the ability to predict and rank hazard of these bisphenols in terms of organ-specific bioaccumulation making it a useful tool for chemical screening and prioritization efforts. The results indicate that bisphenols AP, C and Z as well as tetrabromo bisphenol A may have larger potential for bioaccumulation than the widely used bisphenol A (BPA), indicating that these compounds do not constitute safer industrial substitutions.  

Lastly, we present in Paper III the development of a toxicokinetic model for the zebrafish embryo life-stage. Since the zebrafish embryo test is widely applied in toxicology research, the developed model provides a tool to better understand how varying testing conditions may affect dose at target thus providing a means to compare internal effect concentrations. Additionally, we applied the model in combination with data on estrogenic activity in order to rank the relative hazard of investigated bisphenols, which showed that bisphenols AF, C, B and Z may be more hazardous than BPA.

Overall the developed computational tools showed good predictive performance and improvements in parameterization, thus providing tools for understanding dose at target and toxicokinetic variation of emerging substances. Furthermore, the thesis presents novel data and findings for per- and polyfluoroalkyl substances and bisphenols, which are environmental pollutants of emerging concern of relevance for future hazard assessments and substitution processes.

Ort, förlag, år, upplaga, sidor
Umeå: Umeå University , 2023. , s. 53
Nyckelord [en]
PBTK, Toxicokinetics, Endocrine disruptors, bisphenols, zebrafish, embryo
Nationell ämneskategori
Annan kemi Beräkningsmatematik
Forskningsämne
toxikologi
Identifikatorer
URN: urn:nbn:se:umu:diva-204535ISBN: 978-91-7855-990-9 (tryckt)ISBN: 978-91-7855-991-6 (digital)OAI: oai:DiVA.org:umu-204535DiVA, id: diva2:1734312
Disputation
2023-03-03, Lilla Hörsalen, KBC byggnad KBE301, Linnaeus väg 10, Umeå, 09:00 (Engelska)
Opponent
Handledare
Forskningsfinansiär
Vetenskapsrådet, 2017-01036Tillgänglig från: 2023-02-10 Skapad: 2023-02-06 Senast uppdaterad: 2023-02-06Bibliografiskt granskad
Delarbeten
1. Investigating the OECD database of per- and polyfluoroalkyl substances - chemical variation and applicability of current fate models
Öppna denna publikation i ny flik eller fönster >>Investigating the OECD database of per- and polyfluoroalkyl substances - chemical variation and applicability of current fate models
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2020 (Engelska)Ingår i: Environmental Chemistry, ISSN 1448-2517, E-ISSN 1449-8979, Vol. 17, nr 7, s. 498-508Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Environmental context A diverse range of materials contain organofluorine chemicals, some of which are hazardous and widely distributed in the environment. We investigated an inventory of over 4700 organofluorine compounds, characterised their chemical diversity and selected representatives for future testing to fill knowledge gaps about their environmental fate and effects. Fate and property models were examined and concluded to be valid for only a fraction of studied organofluorines. Many per- and polyfluoroalkyl substances (PFASs) have been identified in the environment, and some have been shown to be extremely persistent and even toxic, thus raising concerns about their effects on human health and the environment. Despite this, little is known about most PFASs. In this study, the comprehensive database of over 4700 PFAS entries recently compiled by the OECD was curated and the chemical variation was analysed in detail. The analysis revealed 3363 individual PFASs with a huge variation in chemical functionalities and a wide range of mixtures and polymers. A hierarchical clustering methodology was employed on the curated database, which resulted in 12 groups, where only half were populated by well-studied compounds thus indicating the large knowledge gaps. We selected both a theoretical and a procurable training set that covered a substantial part of the chemical domain based on these clusters. Several computational models to predict physicochemical and environmental fate related properties were assessed, which indicated their lack of applicability for PFASs and the urgent need for experimental data for training and validating these models. Our findings indicate reasonable predictions of the octanol-water partition coefficient for a small chemical domain of PFASs but large data gaps and uncertainties for water solubility, bioconcentration factor, and acid dissociation factor predictions. Improved computational tools are necessary for assessing risks of PFASs and for including suggested training set compounds in future testing of both physicochemical and effect-related data. This should provide a solid basis for better chemical understanding and future model development purposes.

Ort, förlag, år, upplaga, sidor
CSIRO Publishing, 2020
Nationell ämneskategori
Analytisk kemi
Identifikatorer
urn:nbn:se:umu:diva-176879 (URN)10.1071/EN19296 (DOI)000584698600004 ()2-s2.0-85083891781 (Scopus ID)
Forskningsfinansiär
Vetenskapsrådet, 2017-00675Vetenskapsrådet, 2017-01036
Tillgänglig från: 2020-11-19 Skapad: 2020-11-19 Senast uppdaterad: 2023-02-06Bibliografiskt granskad
2. Physiologically Based Toxicokinetic Modeling of Bisphenols in Zebrafish (Danio rerio) Accounting for Variations in Metabolic Rates, Brain Distribution, and Liver Accumulation
Öppna denna publikation i ny flik eller fönster >>Physiologically Based Toxicokinetic Modeling of Bisphenols in Zebrafish (Danio rerio) Accounting for Variations in Metabolic Rates, Brain Distribution, and Liver Accumulation
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2022 (Engelska)Ingår i: Environmental Science and Technology, ISSN 0013-936X, E-ISSN 1520-5851, Vol. 56, nr 14, s. 10216-10228Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Bisphenol A (BPA) is an industrial chemical, which has raised human health and environmental concerns due to its endocrine-disrupting properties. BPA analogues are less well-studied despite their wide use in consumer products. These analogues have been detected in water and aquatic organisms around the world, with some analogues showing toxic effects in various species including fish. Here, we present novel organ-specific time-course distribution data of bisphenol Z (BPZ) in female zebrafish (Danio rerio), including concentrations in the ovaries, liver, and brain, a rarely sampled organ with high toxicological relevance. Furthermore, fish-specific in vitro biotransformation rates were determined for 11 selected bisphenols. A physiologically based toxicokinetic (PBTK) model was adapted for four of these bisphenols, which was able to predict levels in the gonads, liver, and brain as well as the whole body within a 2-5-fold error with respect to experimental data, covering several important target organs of toxicity. In particular, predicted liver concentrations improved compared to currently available PBTK models. Predicted data indicate that studied bisphenols mainly distribute to the carcass and gonads and less to the brain. Our model provides a tool to increase our understanding on the distribution and kinetics of a group of emerging pollutants.

Ort, förlag, år, upplaga, sidor
American Chemical Society (ACS), 2022
Nyckelord
biotransformation, bisphenols, endocrine disruptors, PBTK, zebrafish
Nationell ämneskategori
Miljövetenskap
Identifikatorer
urn:nbn:se:umu:diva-198331 (URN)10.1021/acs.est.2c01292 (DOI)000830801200001 ()35797464 (PubMedID)2-s2.0-85134721270 (Scopus ID)
Forskningsfinansiär
Forskningsrådet Formas, 2017-00675Vetenskapsrådet, 2017-01036
Tillgänglig från: 2022-08-02 Skapad: 2022-08-02 Senast uppdaterad: 2023-02-06Bibliografiskt granskad
3. Physiology-informed toxicokinetic model for the zebrafish embryo test: a case study of bisphenols
Öppna denna publikation i ny flik eller fönster >>Physiology-informed toxicokinetic model for the zebrafish embryo test: a case study of bisphenols
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(Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
Nyckelord
Embryo, PBTK, Zebrafish, Bisphenols, Endocrine disruptors
Nationell ämneskategori
Utvecklingsbiologi Annan matematik
Forskningsämne
toxikologi; ekotoxikologi
Identifikatorer
urn:nbn:se:umu:diva-204534 (URN)
Forskningsfinansiär
Vetenskapsrådet, 2019-01838Vetenskapsrådet, 2017-01036Kempestiftelserna
Tillgänglig från: 2023-02-06 Skapad: 2023-02-06 Senast uppdaterad: 2023-05-09

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Chelcea, Ioana C.

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