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Contrast Agent Quantification by Using Spatial Information in Dynamic Contrast Enhanced MRI
Umeå University, Faculty of Science and Technology, Department of Mathematics and Mathematical Statistics.ORCID iD: 0000-0002-9341-1137
Umeå University, Faculty of Medicine, Department of Radiation Sciences, Radiation Physics.ORCID iD: 0000-0002-0532-232X
Umeå University, Faculty of Medicine, Department of Radiation Sciences, Radiation Physics.
Umeå University, Faculty of Science and Technology, Department of Mathematics and Mathematical Statistics. (Mathematical Statistics)ORCID iD: 0000-0001-5673-620X
2021 (English)In: Frontiers in Signal Processing, E-ISSN 2673-8198, Vol. 1, p. 12article id 727387Article in journal (Refereed) Published
Abstract [en]

The purpose of this work is to investigate spatial statistical modelling approaches to improve contrast agent quantification in dynamic contrast enhanced MRI, by utilising the spatial dependence among image voxels. Bayesian hierarchical models (BHMs), such as Besag model and Leroux model, were studied using simulated MRI data. The models were built on smaller images where spatial dependence can be incorporated, and then extended to larger images using the maximum a posteriori (MAP) method. Notable improvements on contrast agent concentration estimation were obtained for both smaller and larger images. For smaller images: the BHMs provided substantial improved estimates in terms of the root mean squared error (rMSE), compared to the estimates from the existing method for a noise level equivalent of a 12-channel head coil at 3T. Moreover, Leroux model outperformed Besag models with two different dependence structures. Specifically, the Besag models increased the estimation precision by 27% around the peak of the dynamic curve, while the Leroux model improved the estimation by 40% at the peak, compared with the existing estimation method. For larger images: the proposed MAP estimators showed clear improvements on rMSE for vessels, tumor rim and white matter.

Place, publisher, year, edition, pages
Frontiers Media S.A., 2021. Vol. 1, p. 12article id 727387
Keywords [en]
Contrast agent quantication, BHM, Besag, Leroux, INLA, MAP
National Category
Probability Theory and Statistics Medical Imaging
Research subject
Mathematical Statistics; Radiology
Identifiers
URN: urn:nbn:se:umu:diva-141525DOI: 10.3389/frsip.2021.727387ISI: 001093041400001Scopus ID: 2-s2.0-85212500211OAI: oai:DiVA.org:umu-141525DiVA, id: diva2:1155144
Part of project
Statistical modelling and intelligent data sampling in MRI and PET measurements for cancer therapy assessment, Swedish Research Council
Funder
Swedish Research Council, 2013-5342
Note

Originally included in thesis in manuscript form.

Available from: 2017-11-07 Created: 2017-11-07 Last updated: 2025-02-09Bibliographically approved
In thesis
1. Enhanced block sparse signal recovery and bayesian hierarchical models with applications
Open this publication in new window or tab >>Enhanced block sparse signal recovery and bayesian hierarchical models with applications
2019 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

This thesis is carried out within two projects ‘Statistical modelling and intelligentdata sampling in Magnetic resonance imaging (MRI) and positron-emission tomography(PET) measurements for cancer therapy assessment’ and ‘WindCoE -Nordic Wind Energy Center’ during my PhD study. It mainly focuses on applicationsof Bayesian hierarchical models (BHMs) and theoretical developments ofcompressive sensing (CS). Under the first project, Paper I improves the quantityestimation of MRI parametric imaging by utilizing inherent dependent structure inthe image through BHMs; Paper III constructs a theoretically unbiased and asymptoticallynormal estimator of sparsity of a sparsified MR image by using a BHM;Paper IV extends block sparsity estimation from real-valued signal recovery tocomplex-valued signal recovery. It also demonstrates the importance of accuratelyestimating the block sparsity through a sensitivity analysis; Paper V proposes anew measure, i.e. q-ratio block constrained minimal singular value, of measurementmatrix for block sparse signal recovery. An algorithm for computing thisnew measure is also presented. In the second project, Paper II estimates the uncertaintyof Weather Research and Forecasting (WRF) model’s daily-mean 2-metertemperature in a cold region by using a BHM. It is a computationally cheaper andfaster alternative to traditional ensemble approach. In summary, this thesis makessignificant contributions in improving and optimizing the estimation proceduresof parameters of interest in MRI and WRF in practice, and developing the novelestimators and measure under the framework of CS in theory.

Place, publisher, year, edition, pages
Umeå: Umeå University, 2019. p. 35
Series
Research report in mathematical statistics, ISSN 1653-0829 ; 69
Keywords
Magnetic resonance imaging, Bayesian hierarchical models, Weather Research and Forecasting, Compressive sensing, Block sparsity, Multivariate isotropic symmetric a-stable distribution, q-ratio block constrained minimal singular value
National Category
Probability Theory and Statistics
Identifiers
urn:nbn:se:umu:diva-165285 (URN)978-91-7855-148-4 (ISBN)
Public defence
2019-12-17, N450, Naturvetarhuset, Umeå University, Umeå, 13:00 (English)
Opponent
Supervisors
Available from: 2019-11-26 Created: 2019-11-19 Last updated: 2023-09-14Bibliographically approved

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Wang, JianfengGarpebring, AndersBrynolfsson, PatrikYu, Jun

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