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The [4Fe4S] Cluster of Yeast DNA Polymerase ϵ Is Redox Active and Can Undergo DNA-Mediated Signaling
Division of Chemistry and Chemical Engineering, California Institute of Technology, CA, Pasadena, United States.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.ORCID iD: 0000-0003-4165-9277
Division of Chemistry and Chemical Engineering, California Institute of Technology, CA, Pasadena, United States; Department of Chemistry, The College of New Jersey, NJ, Ewing, United States.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.ORCID iD: 0000-0002-8526-6224
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2021 (English)In: Journal of the American Chemical Society, ISSN 0002-7863, E-ISSN 1520-5126, Vol. 143, no 39, p. 16147-16153Article in journal (Refereed) Published
Abstract [en]

Many DNA replication and DNA repair enzymes have been found to carry [4Fe4S] clusters. The major leading strand polymerase, DNA polymerase ε (Pol ε) from Saccharomyces cerevisiae, was recently reported to have a [4Fe4S] cluster located within the catalytic domain of the largest subunit, Pol2. Here the redox characteristics of the [4Fe4S] cluster in the context of that domain, Pol2CORE, are explored using DNA electrochemistry, and the effects of oxidation and rereduction on polymerase activity are examined. The exonuclease deficient variant D290A/E292A, Pol2COREexo, was used to limit DNA degradation. While no redox signal is apparent for Pol2COREexo on DNA-modified electrodes, a large cathodic signal centered at −140 mV vs NHE is observed after bulk oxidation. A double cysteine to serine mutant (C665S/C668S) of Pol2COREexo, which lacks the [4Fe4S] cluster, shows no similar redox signal upon oxidation. Significantly, protein oxidation yields a sharp decrease in polymerization, while rereduction restores activity almost to the level of untreated enzyme. Moreover, the addition of reduced EndoIII, a bacterial DNA repair enzyme containing [4Fe4S]2+, to oxidized Pol2COREexo bound to its DNA substrate also significantly restores polymerase activity. In contrast, parallel experiments with EndoIIIY82A, a variant of EndoIII, defective in DNA charge transport (CT), does not show restoration of activity of Pol2COREexo. We propose a model in which EndoIII bound to the DNA duplex may shuttle electrons through DNA to the DNA-bound oxidized Pol2COREexo via DNA CT and that this DNA CT signaling offers a means to modulate the redox state and replication by Pol ε.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2021. Vol. 143, no 39, p. 16147-16153
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:umu:diva-189183DOI: 10.1021/jacs.1c07150ISI: 000706193200025PubMedID: 34559527Scopus ID: 2-s2.0-85116594622OAI: oai:DiVA.org:umu-189183DiVA, id: diva2:1610989
Available from: 2021-11-12 Created: 2021-11-12 Last updated: 2025-02-20Bibliographically approved

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ter Beek, JosyJohansson, Erik

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