DeepMuCS: A framework for co-culture microscopic image analysis: from generation to segmentationShow others and affiliations
2022 (English)In: 2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), IEEE, 2022, p. 1-4Conference paper, Published paper (Refereed)
Abstract [en]
Discrimination between cell types in the co-culture environment with multiple cell lines can assist in examining the interaction between different cell populations. Identifying different cell cultures in addition to cell segmentation in co-culture is essential for understanding the cellular mechanisms associated with disease states. In drug development, biologists are more interested in co-culture models because they replicate the tumor environment in vivo better than the monoculture models. Additionally, they have a measurable effect on cancer cell response to treatment. Co-culture models are critical for designing a drug with maximum efficacy on cancer while minimizing harm to the rest of the body. In the past, there existed minimal progress related to cell-type aware segmentation in the monoculture and no development whatsoever for the co-culture. The introduction of the LIVECell dataset has allowed us to perform experiments for cell-type-aware segmentation. However, it is composed of microscopic images in a monoculture environment. This paper presents a framework for co-culture microscopic image data generation, where each image can contain multiple cell cultures. The framework also presents a pipeline for culture-dependent cell segmentation in co-culture microscopic images. The extensive evaluation revealed that it is possible to achieve cell-type aware segmentation in co-culture microscopic images with good precision.
Place, publisher, year, edition, pages
IEEE, 2022. p. 1-4
Keywords [en]
biomedical, cell segmentation, co-culture, deep learning, healthcare
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
URN: urn:nbn:se:umu:diva-201641DOI: 10.1109/BHI56158.2022.9926936ISI: 000895865900089Scopus ID: 2-s2.0-85143072914ISBN: 9781665487917 (electronic)OAI: oai:DiVA.org:umu-201641DiVA, id: diva2:1718515
Conference
2022 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2022, September 27-30, 2022
2022-12-132022-12-132023-09-05Bibliographically approved