Umeå University's logo

umu.sePublications
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Computational methods for assessing chemical risk: focusing on toxicokinetic modelling in zebrafish (danio rerio)
Umeå University, Faculty of Science and Technology, Department of Chemistry.ORCID iD: 0000-0002-2129-5210
2023 (English)Doctoral thesis, comprehensive summary (Other academic)Alternative title
Beräkningsmetoder för att bedöma kemikalierisker : med fokus på toxikokinetiska processer i zebrafisk (danio rerio) (Swedish)
Abstract [en]

New chemicals are constantly produced and large data gaps exist on hazards of currently used industrial chemicals, stressing the need for rapid, ethically sound and cost-efficient hazard assessment methods. Traditional methods for effect assessment based on animal testing, do not meet these requirements and thus the toxicology field has been moving towards the development of new approach methodologies which include in vitro approaches but also computational methods. The current work has mainly focused on computational tools but also employed in vitro and in vivo methodologies for the development and validation of the in silico approaches.

We firstly explored chemical variation of emerging chemicals as a basis for selecting sub-groups of per- and polyfluoroalkyl substances (PFASs) and bisphenols for Papers I and II. These compounds can be used for future testing and as case study compounds for in silico tools development. The PFASs selection showed compounds with large differences in structure and highlighted the lack of knowledge for large parts of the PFASs chemical domain. This likely is the main driver of the low predictive accuracy of some current fate models and the need for expanding their applicability domains. 

In Paper II we investigated the toxicokinetics of selected bisphenols in a commonly studied model organism, the zebrafish (Danio rerio), and developed a physiologically-based toxicokinetic model. Novel data for fish biotransformation was derived and showed lower rates than those measured in humans, providing valuable insight for both model parameterization and for chemical safety assessment using fish. The model also demonstrated the ability to predict and rank hazard of these bisphenols in terms of organ-specific bioaccumulation making it a useful tool for chemical screening and prioritization efforts. The results indicate that bisphenols AP, C and Z as well as tetrabromo bisphenol A may have larger potential for bioaccumulation than the widely used bisphenol A (BPA), indicating that these compounds do not constitute safer industrial substitutions.  

Lastly, we present in Paper III the development of a toxicokinetic model for the zebrafish embryo life-stage. Since the zebrafish embryo test is widely applied in toxicology research, the developed model provides a tool to better understand how varying testing conditions may affect dose at target thus providing a means to compare internal effect concentrations. Additionally, we applied the model in combination with data on estrogenic activity in order to rank the relative hazard of investigated bisphenols, which showed that bisphenols AF, C, B and Z may be more hazardous than BPA.

Overall the developed computational tools showed good predictive performance and improvements in parameterization, thus providing tools for understanding dose at target and toxicokinetic variation of emerging substances. Furthermore, the thesis presents novel data and findings for per- and polyfluoroalkyl substances and bisphenols, which are environmental pollutants of emerging concern of relevance for future hazard assessments and substitution processes.

Place, publisher, year, edition, pages
Umeå: Umeå University , 2023. , p. 53
Keywords [en]
PBTK, Toxicokinetics, Endocrine disruptors, bisphenols, zebrafish, embryo
National Category
Other Chemistry Topics Computational Mathematics
Research subject
Toxicology
Identifiers
URN: urn:nbn:se:umu:diva-204535ISBN: 978-91-7855-990-9 (print)ISBN: 978-91-7855-991-6 (electronic)OAI: oai:DiVA.org:umu-204535DiVA, id: diva2:1734312
Public defence
2023-03-03, Lilla Hörsalen, KBC byggnad KBE301, Linnaeus väg 10, Umeå, 09:00 (English)
Opponent
Supervisors
Funder
Swedish Research Council, 2017-01036Available from: 2023-02-10 Created: 2023-02-06 Last updated: 2023-02-06Bibliographically approved
List of papers
1. Investigating the OECD database of per- and polyfluoroalkyl substances - chemical variation and applicability of current fate models
Open this publication in new window or tab >>Investigating the OECD database of per- and polyfluoroalkyl substances - chemical variation and applicability of current fate models
Show others...
2020 (English)In: Environmental Chemistry, ISSN 1448-2517, E-ISSN 1449-8979, Vol. 17, no 7, p. 498-508Article in journal (Refereed) Published
Abstract [en]

Environmental context A diverse range of materials contain organofluorine chemicals, some of which are hazardous and widely distributed in the environment. We investigated an inventory of over 4700 organofluorine compounds, characterised their chemical diversity and selected representatives for future testing to fill knowledge gaps about their environmental fate and effects. Fate and property models were examined and concluded to be valid for only a fraction of studied organofluorines. Many per- and polyfluoroalkyl substances (PFASs) have been identified in the environment, and some have been shown to be extremely persistent and even toxic, thus raising concerns about their effects on human health and the environment. Despite this, little is known about most PFASs. In this study, the comprehensive database of over 4700 PFAS entries recently compiled by the OECD was curated and the chemical variation was analysed in detail. The analysis revealed 3363 individual PFASs with a huge variation in chemical functionalities and a wide range of mixtures and polymers. A hierarchical clustering methodology was employed on the curated database, which resulted in 12 groups, where only half were populated by well-studied compounds thus indicating the large knowledge gaps. We selected both a theoretical and a procurable training set that covered a substantial part of the chemical domain based on these clusters. Several computational models to predict physicochemical and environmental fate related properties were assessed, which indicated their lack of applicability for PFASs and the urgent need for experimental data for training and validating these models. Our findings indicate reasonable predictions of the octanol-water partition coefficient for a small chemical domain of PFASs but large data gaps and uncertainties for water solubility, bioconcentration factor, and acid dissociation factor predictions. Improved computational tools are necessary for assessing risks of PFASs and for including suggested training set compounds in future testing of both physicochemical and effect-related data. This should provide a solid basis for better chemical understanding and future model development purposes.

Place, publisher, year, edition, pages
CSIRO Publishing, 2020
National Category
Analytical Chemistry
Identifiers
urn:nbn:se:umu:diva-176879 (URN)10.1071/EN19296 (DOI)000584698600004 ()2-s2.0-85083891781 (Scopus ID)
Funder
Swedish Research Council, 2017-00675Swedish Research Council, 2017-01036
Available from: 2020-11-19 Created: 2020-11-19 Last updated: 2023-02-06Bibliographically approved
2. Physiologically Based Toxicokinetic Modeling of Bisphenols in Zebrafish (Danio rerio) Accounting for Variations in Metabolic Rates, Brain Distribution, and Liver Accumulation
Open this publication in new window or tab >>Physiologically Based Toxicokinetic Modeling of Bisphenols in Zebrafish (Danio rerio) Accounting for Variations in Metabolic Rates, Brain Distribution, and Liver Accumulation
Show others...
2022 (English)In: Environmental Science and Technology, ISSN 0013-936X, E-ISSN 1520-5851, Vol. 56, no 14, p. 10216-10228Article in journal (Refereed) Published
Abstract [en]

Bisphenol A (BPA) is an industrial chemical, which has raised human health and environmental concerns due to its endocrine-disrupting properties. BPA analogues are less well-studied despite their wide use in consumer products. These analogues have been detected in water and aquatic organisms around the world, with some analogues showing toxic effects in various species including fish. Here, we present novel organ-specific time-course distribution data of bisphenol Z (BPZ) in female zebrafish (Danio rerio), including concentrations in the ovaries, liver, and brain, a rarely sampled organ with high toxicological relevance. Furthermore, fish-specific in vitro biotransformation rates were determined for 11 selected bisphenols. A physiologically based toxicokinetic (PBTK) model was adapted for four of these bisphenols, which was able to predict levels in the gonads, liver, and brain as well as the whole body within a 2-5-fold error with respect to experimental data, covering several important target organs of toxicity. In particular, predicted liver concentrations improved compared to currently available PBTK models. Predicted data indicate that studied bisphenols mainly distribute to the carcass and gonads and less to the brain. Our model provides a tool to increase our understanding on the distribution and kinetics of a group of emerging pollutants.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2022
Keywords
biotransformation, bisphenols, endocrine disruptors, PBTK, zebrafish
National Category
Environmental Sciences
Identifiers
urn:nbn:se:umu:diva-198331 (URN)10.1021/acs.est.2c01292 (DOI)000830801200001 ()35797464 (PubMedID)2-s2.0-85134721270 (Scopus ID)
Funder
Swedish Research Council Formas, 2017-00675Swedish Research Council, 2017-01036
Available from: 2022-08-02 Created: 2022-08-02 Last updated: 2023-02-06Bibliographically approved
3. Physiology-informed toxicokinetic model for the zebrafish embryo test: a case study of bisphenols
Open this publication in new window or tab >>Physiology-informed toxicokinetic model for the zebrafish embryo test: a case study of bisphenols
Show others...
(English)Manuscript (preprint) (Other academic)
Keywords
Embryo, PBTK, Zebrafish, Bisphenols, Endocrine disruptors
National Category
Developmental Biology Other Mathematics
Research subject
Toxicology; Ecotoxicology
Identifiers
urn:nbn:se:umu:diva-204534 (URN)
Funder
Swedish Research Council, 2019-01838Swedish Research Council, 2017-01036The Kempe Foundations
Available from: 2023-02-06 Created: 2023-02-06 Last updated: 2023-05-09

Open Access in DiVA

fulltext(2498 kB)527 downloads
File information
File name FULLTEXT01.pdfFile size 2498 kBChecksum SHA-512
5c34513d21b75072f8767569c4cfc3ac20aa4cf9299846daa782495187bc3d1be518ac4f4a7225f42b16d1a5d4c7bd87e382e4ddd20a21885237d16d7b08d915
Type fulltextMimetype application/pdf
spikblad(431 kB)98 downloads
File information
File name SPIKBLAD01.pdfFile size 431 kBChecksum SHA-512
b1d10ae7c98a564c66df7968f4dcde38de8596caad63fb273507b19b8789f0e2264d850e97b84456a224f47459b16658c7ace79c1a8c6bbcd8a95999ef44cab8
Type spikbladMimetype application/pdf

Authority records

Chelcea, Ioana C.

Search in DiVA

By author/editor
Chelcea, Ioana C.
By organisation
Department of Chemistry
Other Chemistry TopicsComputational Mathematics

Search outside of DiVA

GoogleGoogle Scholar
Total: 528 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

isbn
urn-nbn

Altmetric score

isbn
urn-nbn
Total: 1038 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf