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Repurposing screen identifies novel candidates for broad-spectrum coronavirus antivirals and druggable host targets
Institute for Experimental Virology, Twincore - Centre for Experimental and Clinical Infection Research, Hannover, Germany.
Institute for Experimental Virology, Twincore - Centre for Experimental and Clinical Infection Research, Hannover, Germany.
Institute for Experimental Virology, Twincore - Centre for Experimental and Clinical Infection Research, Hannover, Germany.
Institute for Experimental Virology, Twincore - Centre for Experimental and Clinical Infection Research, Hannover, Germany.
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2024 (English)In: Antimicrobial Agents and Chemotherapy, ISSN 0066-4804, E-ISSN 1098-6596, Vol. 68, no 3, article id e01210-23Article in journal (Refereed) Published
Abstract [en]

Libraries composed of licensed drugs represent a vast repertoire of molecules modulating physiological processes in humans, providing unique opportunities for the discovery of host-targeting antivirals. We screened the Repurposing, Focused Rescue, and Accelerated Medchem (ReFRAME) repurposing library with approximately 12,000 molecules for broad-spectrum coronavirus antivirals and discovered 134 compounds inhibiting an alphacoronavirus and mapping to 58 molecular target categories. Dominant targets included the 5-hydroxytryptamine receptor, the dopamine receptor, and cyclin-dependent kinases. Gene knock-out of the drugs’ host targets including cathepsin B and L (CTSB/L; VBY-825), the aryl hydrocarbon receptor (AHR; Phortress), the farnesyl-diphosphate farnesyltransferase 1 (FDFT1; P-3622), and the kelch-like ECH-associated protein 1 (KEAP1; Omaveloxolone), significantly modulated HCoV-229E infection, providing evidence that these compounds inhibited the virus through acting on their respective host targets. Counter-screening of all 134 primary compound candidates with SARS-CoV-2 and validation in primary cells identified Phortress, an AHR activating ligand, P-3622-targeting FDFT1, and Omaveloxolone, which activates the NFE2-like bZIP transcription factor 2 (NFE2L2) by liberating it from its endogenous inhibitor KEAP1, as antiviral candidates for both an Alpha- and a Betacoronavirus. This study provides an overview of HCoV-229E repurposing candidates and reveals novel potentially druggable viral host dependency factors hijacked by diverse coronaviruses.

Place, publisher, year, edition, pages
American Society for Microbiology, 2024. Vol. 68, no 3, article id e01210-23
Keywords [en]
antivirals, coronavirus, CRISPR/Cas9, HCoV-229E, host-targeting antiviral therapy, repurposing, SARS-CoV-2
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:umu:diva-222422DOI: 10.1128/aac.01210-23ISI: 001158282200001PubMedID: 38319076Scopus ID: 2-s2.0-85187004901OAI: oai:DiVA.org:umu-222422DiVA, id: diva2:1847517
Funder
German Research Foundation (DFG), 158989968German Research Foundation (DFG), 417852234Knut and Alice Wallenberg FoundationAvailable from: 2024-03-28 Created: 2024-03-28 Last updated: 2025-02-20Bibliographically approved

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Gerold, Gisa

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Wallenberg Centre for Molecular Medicine at Umeå University (WCMM)Section of Virology
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