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ProstateZones: segmentations of the prostatic zones and urethra for the PROSTATEx dataset
Umeå University, Faculty of Medicine, Department of Diagnostics and Intervention.ORCID iD: 0009-0001-0988-0134
Umeå University, Faculty of Medicine, Department of Diagnostics and Intervention.ORCID iD: 0000-0002-6321-8117
Umeå University, Faculty of Medicine, Department of Diagnostics and Intervention.ORCID iD: 0000-0002-3683-3763
University of Szeged, Albert Szent-Györgyi Medical School, Department of Radiology, Szeged, Hungary.
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2024 (English)In: Scientific Data, E-ISSN 2052-4463, Vol. 11, no 1, article id 1097Article in journal (Refereed) Published
Abstract [en]

Manual segmentations are considered the gold standard for ground truth in machine learning applications. Such tasks are tedious and time-consuming, albeit necessary to train reliable models. In this work, we present a dataset with expert segmentations of the prostatic zones and urethra for 200 randomly selected patients from the PROSTATEx dataset. Notably, independent duplicate segmentations were performed for 40 patients, providing inter-reader variability data. This results in a total of 240 segmentations. This dataset can be used to train machine learning models or serve as an external test set for evaluating models trained on private data, thereby addressing a current gap in the field. The delineated structures and terminology adhere to the latest Prostate Imaging Reporting and Data Systems v2.1 guidelines, ensuring consistency.

Place, publisher, year, edition, pages
Springer Nature, 2024. Vol. 11, no 1, article id 1097
National Category
Radiology, Nuclear Medicine and Medical Imaging Computer Sciences
Identifiers
URN: urn:nbn:se:umu:diva-230979DOI: 10.1038/s41597-024-03945-2ISI: 001331330300004PubMedID: 39379407Scopus ID: 2-s2.0-85205955286OAI: oai:DiVA.org:umu-230979DiVA, id: diva2:1908864
Available from: 2024-10-29 Created: 2024-10-29 Last updated: 2024-10-29Bibliographically approved

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Holmlund, WilliamSimkó, AttilaSöderkvist, KarinBrynolfsson, PatrikNyholm, Tufve

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