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Exploring dNTP dynamics for therapeutic strategies to combat mitochondrial DNA disorders
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.ORCID iD: 0000-0002-6263-0142
2026 (English)Doctoral thesis, comprehensive summary (Other academic)Alternative title
dNTP-dynamik som grund för utveckling av behandlingsstrategier mot mitokondriella DNA-sjukdomar (Swedish)
Abstract [en]

Mitochondrial diseases are estimated to affect one child out of every 5,000 born worldwide. A major subgroup, mitochondrial DNA depletion syndromes (MDDS), is defined by failure to maintain optimal mitochondrial DNA (mtDNA) copy number. Severe MDDS causes progressive mitochondrial dysfunction and early mortality, but treatment options are limited by knowledge gaps in the interplay between the metabolic pathways that supply DNA building blocks (dNTPs). An MDDS variant arises from deficiency in RRM2B, a protein required for dNTP synthesis in non-dividing cells. To determine how MDDS-associated pathologies could be mitigated, my research analysed RRM2B-deficient mice as an MDDS model.

This thesis describes how the balance between RRM2B-dependent synthesis and SAMHD1-mediated degradation controls dNTP availability in non-dividing tissues, establishes purine-selective dNTP depletion as a central biochemical feature of RRM2B-associated MDDS, and explains differences in disease onset and tissue vulnerability. We achieved these goals by first evaluating how the loss of RRM2B impacts dNTP concentrations and mtDNA copy number, as well as mouse physiology and survival. We observed that RRM2B deficiency shortened mouse lifespan due to depletion of purine dNTPs and mtDNA copy number, along with structural deterioration of specific tissues, detectable only after birth. We then determined how these parameters changed with concurrent deletion of SAMHD1, a major dNTP-degrading protein, as a countermeasure.

Deletion of SAMHD1 countered the MDDS phenotype by elevating purine dNTP concentrations and mtDNA copy number. This extended mouse survival significantly, with a clear regression of structural deformities in key tissues such as the kidneys and skeletal muscle. Interestingly, the extent of dNTP recovery was tissue-dependent, being highest in the liver and spleen, possibly due to the activity of other dNTP-producing enzymes, and/or differential SAMHD1 activity in these tissues.

Importantly, the partial rescue achieved by deleting SAMHD1 provides a mechanistic rationale for a therapeutic strategy that combines increasing dNTP supply with inhibiting dNTP degradation.

Place, publisher, year, edition, pages
Umeå: Umeå University, 2026. , p. 54
Series
Umeå University medical dissertations, ISSN 0346-6612 ; 2414
Keywords [en]
Deoxynucleotide, Mitochondrion, DNA, Rare disease, dNTP, RRM2B, RNR, SAMHD1.
National Category
Cell and Molecular Biology
Research subject
Medical Biochemistry; Medical Biochemistry
Identifiers
URN: urn:nbn:se:umu:diva-250427ISBN: 978-91-8070-958-3 (electronic)ISBN: 978-91-8070-957-6 (print)OAI: oai:DiVA.org:umu-250427DiVA, id: diva2:2042779
Public defence
2026-03-27, Aula Biologica, 09:00 (English)
Opponent
Supervisors
Available from: 2026-03-06 Created: 2026-03-02 Last updated: 2026-04-17Bibliographically approved
List of papers
1. RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis
Open this publication in new window or tab >>RRM2B deficiency causes dATP and dGTP depletion through enhanced degradation and slower synthesis
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2025 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 122, no 16, article id e2503531122Article in journal (Refereed) Published
Abstract [en]

Mitochondrial DNA (mtDNA) replication requires a steady supply of deoxyribonucleotides (dNTPs), synthesized de novo by ribonucleotide reductase (RNR). In nondividing cells, RNR consists of RRM1 and RRM2B subunits. Mutations in RRM2B cause mtDNA depletion syndrome, linked to muscle weakness, neurological decline, and early mortality. The impact of RRM2B deficiency on dNTP pools in nondividing tissues remains unclear. Using a mouse knockout model, we demonstrate that RRM2B deficiency selectively depletes dATP and dGTP, while dCTP and dTTP levels remain stable or increase. This depletion pattern resembles the effects of hydroxyurea, an inhibitor that reduces overall RNR activity. Mechanistically, we propose that the depletion of dATP and dGTP arises from their preferred degradation by the dNTPase SAMHD1 and the lower production rate of dATP by RNR. Identifying dATP and dGTP depletion as a hallmark of RRM2B deficiency provides insights for developing nucleoside bypass therapies to alleviate the effects of RRM2B mutations.

Place, publisher, year, edition, pages
Proceedings of the National Academy of Sciences (PNAS), 2025
Keywords
ribonucleotide reductase, dNTP metabolism, mtDNA stability, genome stability
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:umu:diva-238192 (URN)10.1073/pnas.2503531122 (DOI)40244665 (PubMedID)2-s2.0-105003415251 (Scopus ID)
Funder
Swedish Research Council, 2022-00675Swedish Research Council, 2024-03261Swedish Cancer Society, 22 2377 PjSwedish Cancer Society, 22 2381 PjKnut and Alice Wallenberg Foundation, KAW 2021.0053
Available from: 2025-04-26 Created: 2025-04-26 Last updated: 2026-03-02Bibliographically approved
2. SAMHD1 inactivation prolongs survival and improves mitochondrial genome maintenance in RRM2B-deficient mice
Open this publication in new window or tab >>SAMHD1 inactivation prolongs survival and improves mitochondrial genome maintenance in RRM2B-deficient mice
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(English)Manuscript (preprint) (Other academic)
Abstract [en]

Faithful replication of mitochondrial DNA (mtDNA) depends on a continuous supply of deoxyribonucleoside triphosphates (dNTPs) generated by ribonucleotide reductase (RNR). In post-mitotic tissues, RNR activity relies on the small subunit RRM2B. Loss of RRM2B impairs dNTP synthesis and causes mitochondrial DNA depletion syndrome (MDDS), a multisystem disorder characterized by progressive muscular and neurological decline.We have previously demonstrated that RRM2B deficiency disproportionately reduces dATP and dGTP, likely due to their enhanced breakdown by the dNTPase SAMHD1. Here, we asked whether deleting SAMHD1 could correct this imbalance and alleviate the associated pathology.To test this hypothesis, we generated mice lacking both RRM2B and SAMHD1. Genetic inactivation of SAMHD1 increased purine dNTP levels in several tissues, albeit incompletely and in a tissue-dependent manner, partially restored mtDNA copy number, improved organ morphology, and extended survival by ~25%.These findings show that loss of SAMHD1 partly reverses the biochemical and physiological defects caused by RRM2B deficiency, revealing that dNTP degradation can be targeted to rebalance mitochondrial nucleotide homeostasis in specific forms of MDDS.

Keywords
dNTPs, SAMHD1, RRM2B, mitochondrial DNA, genome
National Category
Cell and Molecular Biology Other Basic Medicine
Research subject
molecular medicine (medical sciences); Medical Biochemistry; Medical Biochemistry
Identifiers
urn:nbn:se:umu:diva-250426 (URN)
Available from: 2026-03-01 Created: 2026-03-01 Last updated: 2026-03-02Bibliographically approved

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Awoyomi, Ololade Folajimi

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