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Deep learning and automated MRI analysis in idiopathic normal pressure hydrocephalus: methodological developments for outcome prediction and quantitative DESH assessment
Umeå University, Faculty of Medicine, Department of Diagnostics and Intervention.ORCID iD: 0009-0004-6341-8444
2026 (English)Doctoral thesis, comprehensive summary (Other academic)Alternative title
Djupinlärning och automatiserad MRI-analys vid idiopatisk normaltryckshydrocefalus : metodutvecklingar för utfallsprediktion och kvantitativ DESH-bedömning (Swedish)
Abstract [en]

Idiopathic normal pressure hydrocephalus (INPH) is a neurological disorder characterized by impaired gait and balance, cognitive decline and incontinence, in combination with enlarged lateral ventricles. Although symptoms can often be alleviated through surgical insertion of a cerebrospinal fluid (CSF) shunt, a substantial proportion of patients do not improve after surgery. There is therefore a need for new analytical methods that can extract more informative features from MRI to improve diagnostic and prognostic accuracy.

This thesis consists of the work from four papers with the overall aim to develop and assess artificial intelligence (AI)-based and fully automated MRI-based methods, to improve objective assessment and shunt decision support in INPH.

Several well-known convolutional neural networks (CNNs) were applied to 3D brain magnetic resonance imaging (MRI) data to distinguish between participants with an INPH-typical gait pattern and controls. An ensemble model search was developed to find the optimal ensemble for the task at hand, by optimizing combinations of diverse models. A fusion search strategy was also developed, to determine the optimal fusion points for information fusion between different MRI sequences. Shunt outcome prediction was evaluated with both deep learning approaches, using the two search algorithms, as well as with radiomics-based machine learning models. Finally, a fully automated pipeline was developed for assessment of disproportionally enlarged subarachnoid space hydrocephalus (DESH), utilising image segmentation and image analysis techniques to determine a quantitative DESH metric (qDESH). The work was conducted on brain MRI from one population-based cohort (Paper I), two open access datasets (Paper II), a clinical cohort of shunted INPH patients (Paper III) and a retrospective cohort of INPH patients and controls (Paper IV).

All CNNs distinguished between gait-impaired and controls, in terms of a chi-square test of independence. The optimized ensemble model achieved the highest classification performance, exceeding that of the individual networks and conventional radiological measures. The results support the presence of detectable structural differences in brain MRI between the groups. The sequential search of multimodal fusion points improved classification performance compared with unimodal and conventional fusion strategies, while reducing computational cost. However, when applying these methodologies to predict shunt outcome, no model achieved clinically sufficient performance. These findings indicate that structural MRI alone is not yet reliable for shunt prediction in INPH. The fully automated qDESH pipeline demonstrated high agreement with the established semi-automatic qDESH method, although the agreement was lower than between two raters of the semi-automatic method. The automated measure of qDESH aligned well with visual assessment of DESH.

In conclusion, this thesis advances methodologies for AI-based and automated brain MRI analysis, particularly for INPH. Introducing and evaluating an optimized ensemble strategy, a systematic multimodal fusion approach, and a fully automated quantitative imaging pipeline, the work demonstrates both the potential and the current limitations of advanced and automated MRI analysis in INPH. The fully automated qDESH pipeline showed good agreement with both the semi-automatic method and visual DESH ratings, although further refinement is required before it can be applied in clinical practice. While CNNs can capture differences in brain MRI beyond conventional linear measures, they cannot yet predict shunt response in a clinically useful way. Structural MRI data alone might be insufficient, and additional non-imaging data might be required. The findings highlight the importance of diversity across models and imaging sequences to improve data-driven image assessment. The need for large clinical datasets is a limiting factor, making collaboration among multiple centres necessary to enable further methodological developments. The methodological approaches and insights presented here may also be transferable to other neurological disorders in which MRI plays a central diagnostic role, thereby contributing more broadly to the neuroimaging field.

Place, publisher, year, edition, pages
Umeå: Umeå University, 2026. , p. 71
Series
Umeå University medical dissertations, ISSN 0346-6612 ; 2419
Keywords [en]
Idiopathic normal pressure hydrocephalus, Deep learning, Ensemble search, Medical imaging, MRI, Automated image analysis, Multimodal ensembles, Outcome prediction
National Category
Radiology and Medical Imaging
Identifiers
URN: urn:nbn:se:umu:diva-251253ISBN: 978-91-8070-969-9 (print)ISBN: 978-91-8070-970-5 (electronic)OAI: oai:DiVA.org:umu-251253DiVA, id: diva2:2047438
Public defence
2026-04-17, Triple Helix, Universitetsledningshuset, Universitetstorget 4, Umeå, 09:00 (English)
Opponent
Supervisors
Funder
Swedish Foundation for Strategic Research, RMX18-0152Swedish Research Council, 2021-00711_VR/JPNDAvailable from: 2026-03-27 Created: 2026-03-20 Last updated: 2026-03-23Bibliographically approved
List of papers
1. An optimized ensemble search approach for classification of higher-level gait disorder using brain magnetic resonance images
Open this publication in new window or tab >>An optimized ensemble search approach for classification of higher-level gait disorder using brain magnetic resonance images
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2025 (English)In: Computers in Biology and Medicine, ISSN 0010-4825, E-ISSN 1879-0534, Vol. 184, article id 109457Article in journal (Refereed) Published
Abstract [en]

Higher-Level Gait Disorder (HLGD) is a type of gait disorder estimated to affect up to 6% of the older population. By definition, its symptoms originate from the higher-level nervous system, yet its association with brain morphology remains unclear. This study hypothesizes that there are patterns in brain morphology linked to HLGD. For the first time in the literature, this work investigates whether deep learning, in the form of convolutional neural networks, can capture patterns in magnetic resonance images to identify individuals affected by HLGD. To handle this new classification task, we propose setting up an ensemble of models. This leverages the benefits of combining classifiers instead of determining which network is the most suitable, developing a new architecture, or customizing an existing one. We introduce a computationally cost-effective search algorithm to find the optimal ensemble by leveraging a cost function of both traditional performance scores and the diversity among the models. Using a unique dataset from a large population-based cohort (VESPR), the ensemble identified by our algorithm demonstrated superior performance compared to single networks, other ensemble fusion techniques, and the best linear radiological measure. This emphasizes the importance of implementing diversity into the cost function. Furthermore, the results indicate significant morphological differences in brain structure between HLGD-affected individuals and controls, motivating research about which areas the networks base their classifications on, to get a better understanding of the pathophysiology of HLGD.

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
Artificial intelligence, CNN, Convolutional neural networks, Ensemble learning, Gait disorder, Medical imaging, MRI, Neurological disorders, Normal pressure hydrocephalus, Optimization
National Category
Neurosciences
Identifiers
urn:nbn:se:umu:diva-232782 (URN)10.1016/j.compbiomed.2024.109457 (DOI)2-s2.0-85210376400 (Scopus ID)
Funder
Swedish Foundation for Strategic Research, RMX18-0152Swedish Research Council, 2021-00711_VR/JPNDUmeå UniversityRegion Västerbotten
Available from: 2024-12-13 Created: 2024-12-13 Last updated: 2026-03-20Bibliographically approved
2. Timing is everything: finding the optimal fusion points in multimodal medical imaging
Open this publication in new window or tab >>Timing is everything: finding the optimal fusion points in multimodal medical imaging
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2025 (English)In: Proceedings of the International Joint Conference on Neural Networks, Institute of Electrical and Electronics Engineers (IEEE), 2025Conference paper, Published paper (Refereed)
Abstract [en]

Multimodal deep learning harnesses diverse imaging modalities, such as MRI sequences, to enhance diagnostic accuracy in medical imaging. A key challenge is determining the optimal timing for integrating these modalities - specifically, identifying the network layers where fusion modules should be inserted. Current approaches often rely on manual tuning or exhaustive search, which are computationally expensive without any guarantee of converging to optimal results. We propose a sequential forward search algorithm that incrementally activates and evaluates candidate fusion modules at different layers of a multimodal network. At each step, the algorithm retrains from previously learned weights and compares validation loss to identify the best-performing configuration. This process systematically reduces the search space, enabling efficient identification of the optimal fusion timing without exhaustively testing all possible module placements. The approach is validated on two multimodal MRI datasets, each addressing different classification tasks. Our algorithm consistently identified configurations that outperformed unimodal baselines, late fusion, and a brute-force ensemble of all potential fusion placements. These architectures demonstrated superior accuracy, F-score, and specificity while maintaining competitive or improved AUC values. Furthermore, the sequential nature of the search significantly reduced computational overhead, making the optimization process more practical. By systematically determining the optimal timing to fuse imaging modalities, our method advances multimodal deep learning for medical imaging. It provides an efficient and robust framework for fusion optimization, paving the way for improved clinical decision-making and more adaptable, scalable architectures in medical AI applications.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2025
Series
International Joint Conference on Neural Networks, ISSN 2161-4393, E-ISSN 2161-4407
Keywords
Data Fusion, Medical Imaging, MRI, Multimodal Deep Learning, Neural Architecture Search
National Category
Computer Sciences
Identifiers
urn:nbn:se:umu:diva-249826 (URN)10.1109/IJCNN64981.2025.11227201 (DOI)2-s2.0-105029298413 (Scopus ID)979-8-3315-1042-8 (ISBN)
Conference
2025 International Joint Conference on Neural Networks, IJCNN 2025, Rome, Italy, 30 June - 5 July 2025.
Funder
The Kempe Foundations, JCSMK24-009
Available from: 2026-03-02 Created: 2026-03-02 Last updated: 2026-03-20Bibliographically approved
3. Can AI applied on MRI reliably predict shunt response in INPH?: a comprehensive exploration of deep learning and radiomics approaches using preoperative MRI
Open this publication in new window or tab >>Can AI applied on MRI reliably predict shunt response in INPH?: a comprehensive exploration of deep learning and radiomics approaches using preoperative MRI
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(English)Manuscript (preprint) (Other academic)
Keywords
INPH, Idiopathic normal pressure hydrocephalus, Deep learning, Machine learning, MRI, Classification task, Multimodal imaging, ensemble models
National Category
Radiology and Medical Imaging
Identifiers
urn:nbn:se:umu:diva-251244 (URN)
Funder
Swedish Foundation for Strategic Research, RMX18-0152Swedish Research Council, 2021-00711_VR/JPND
Available from: 2026-03-18 Created: 2026-03-18 Last updated: 2026-03-20Bibliographically approved
4. Automated computation of a quantitative DESH score in Brain MRI for reproducible radiological assessment of hydrocephalus
Open this publication in new window or tab >>Automated computation of a quantitative DESH score in Brain MRI for reproducible radiological assessment of hydrocephalus
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(English)Manuscript (preprint) (Other academic)
Keywords
disproportionately enlarged subarachnoid-space hydrocephalus, DESH, radiology, medical imaging, MRI, automation, image analysis, INPH
National Category
Radiology and Medical Imaging
Identifiers
urn:nbn:se:umu:diva-251251 (URN)
Available from: 2026-03-18 Created: 2026-03-18 Last updated: 2026-03-20Bibliographically approved

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