Time-adjusted performance evaluation (TAPE) of predictive multivariate models for bioprocess dataShow others and affiliations
2026 (English)In: Journal of Analytical Science & Technology, ISSN 2093-3134, E-ISSN 2093-3371, Vol. 17, no 1, article id 20
Article in journal (Refereed) Published
Abstract [en]
Cell culture bioprocess data are typically collected across many timepoints and batches, where numerous analytes covary with each other and, critically, with elapsed process time. This time dependence can inflate performance metrics and compromise the validity of multivariate models. We introduce time-adjusted performance evaluation (TAPE), a regression-agnostic validation technique that quantifies and separates time-driven from time-independent predictivity. TAPE pairs leave-one-group-out cross-validation with per-timepoint centering to decompose performance into between-timepoint (time-dependent) and within-timepoint (time-decoupled) parts by comparing predicted and observed deviations from each timepoint mean. Applying TAPE to orthogonal partial least squares models across five Chinese hamster ovary cell culture datasets (three Raman spectroscopy, one metabolomics, and one transcriptomics), several ostensibly strong models’ predictivity was largely explained by timepoint means alone. After removing between-timepoint variation, only models with sample–response relationships independent of time retained good predictivity. For Raman, only models for Raman-active analytes (glucose, lactate) remained predictive, whereas Raman-inactive ones (K+, NH4+) did not. In the omics studies, the models for titer, viable cell density, growth rate, and death rates were predominantly time-driven. By quantifying time’s contribution to model performance, TAPE helps prevent misleadingly good performance metrics and supports more reliable multivariate modeling of time-series bioprocess data.
Place, publisher, year, edition, pages
Springer, 2026. Vol. 17, no 1, article id 20
Keywords [en]
Bioprocess monitoring, Chinese hamster ovary (CHO) cells, Metabolomics, Model prediction, Model validation, Multivariate calibration, Orthogonal partial least squares (OPLS), Raman spectroscopy, Time-series data, Transcriptomics
National Category
Analytical Chemistry
Identifiers
URN: urn:nbn:se:umu:diva-252262DOI: 10.1186/s40543-026-00538-zISI: 001730658300001Scopus ID: 2-s2.0-105035438112OAI: oai:DiVA.org:umu-252262DiVA, id: diva2:2054029
2026-04-202026-04-202026-04-20Bibliographically approved