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A thumb-domain insertion balances processivity and fidelity in DNA polymerase ε
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.ORCID iD: 0000-0002-8526-6224
2026 (English)In: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 54, no 6, article id gkag282Article in journal (Refereed) Published
Abstract [en]

Recent cryo-EM structures of human DNA polymerase ε (Pol ε) bound to PCNA position a Pol ε-specific thumb insertion (polymerase thumb insertion; PTI) adjacent to a PCNA protomer, suggesting a regulatory role in DNA synthesis. To define the functional contribution of this region, we generated alanine-substitution variants in the yeast Pol ε thumb domain, targeting the PTI (SLED1131–1134→AAAA; polε-SLED) and an adjacent conserved loop (PVTE1101–1104→AAAA; polε-PVTE and KPFN1096–1099→AAAA; polε-KPFN). polε-SLED displayed increased intrinsic processivity, efficient bypass of DNA secondary structures, and enhanced synthesis on long templates, consistent with reduced pausing. In contrast, a previous study extended this substitution to six amino acids, SLEDLD1131-1136→AAAAAA, and found a reversed effect, a reduced processivity, indicating that subtle perturbations in this insertion can have opposing functional consequences. polε-PVTE shifted polymerase activity toward exonuclease proofreading and was not fully rescued by PCNA on long templates, whereas polε-KPFN retained near–wild-type activity but showed increased sensitivity to secondary structures that was alleviated by PCNA. In vivo, the corresponding pol2-SLED allele caused a modest mutator phenotype, while pol2-PVTE and pol2-KPFN showed little or no increase. Together, these results indicate that the PTI fine-tunes intrinsic processivity and proofreading to maintain replication fidelity during leading-strand synthesis.

Place, publisher, year, edition, pages
Oxford University Press, 2026. Vol. 54, no 6, article id gkag282
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:umu:diva-252213DOI: 10.1093/nar/gkag282ISI: 001729295100001PubMedID: 41914498Scopus ID: 2-s2.0-105034704467OAI: oai:DiVA.org:umu-252213DiVA, id: diva2:2055240
Funder
Swedish Research Council, 2021-01 104Swedish Cancer Society, 25 4829 PjAvailable from: 2026-04-23 Created: 2026-04-23 Last updated: 2026-04-23Bibliographically approved

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Singh, NoopurBylund, GöranJohansson, Erik

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