Umeå University's logo

umu.sePublications
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Systematic profiling of growth interactions in human gut microbiome species
Umeå University, Faculty of Science and Technology, Department of Chemistry.
Umeå University, Faculty of Science and Technology, Department of Chemistry.
Umeå University, Faculty of Science and Technology, Department of Chemistry.
Umeå University, Faculty of Science and Technology, Department of Chemistry. Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
Show others and affiliations
2026 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 17, no 1, article id 8012Article in journal (Refereed) Published
Abstract [en]

Microbial interactions shape the composition and stability of the human gut microbiome. Yet, few studies have systematically investigated species-species growth interactions and the mechanisms behind these. Here we show that among 36 representative gut bacterial strains, when two species interact, the interactions are mostly inhibitory. To provide biological insight into specific interactions, we further investigate the basis of a positive interaction, showing that Clostridium perfringens promotes the growth of Mediterraneibacter gnavus through extracellular vesicles. Additionally, we identify Veillonella parvula as a species capable of modulating environmental pH, thereby enabling the growth of Parabacteroides merdae, a strain highly sensitive to acidic conditions. This pH-increasing effect is enhanced by guanine supplementation and persists in multi-species communities containing different pH-lowering strains from diverse bacterial phyla. Although V. parvula is commonly present in human gut microbiomes, it is generally found at low levels. Given the spatial organization of bacteria in the gut, the local pH modulation by V. parvula might support the growth of acid-sensitive strains. Overall, the comprehensive dataset and mechanistic insights presented here provide a starting point to predict microbiome composition by integrating growth interactions.

Place, publisher, year, edition, pages
Nature Portfolio, 2026. Vol. 17, no 1, article id 8012
National Category
Microbiology Microbiology in the Medical Area
Identifiers
URN: urn:nbn:se:umu:diva-257842DOI: 10.1038/s41467-026-76526-zISI: 001843797100002PubMedID: 42567864Scopus ID: 2-s2.0-105046699594OAI: oai:DiVA.org:umu-257842DiVA, id: diva2:2096577
Funder
Swedish Research Council, 2022-02958Swedish Research Council, 2022-02973Swedish Research Council, 2022-00981Swedish Research Council, 2025-02844EU, European Research Council, 101076015Knut and Alice Wallenberg FoundationThe Kempe Foundations, JCK3126Available from: 2026-08-31 Created: 2026-08-31 Last updated: 2026-08-31Bibliographically approved

Open Access in DiVA

fulltext(8638 kB)39 downloads
File information
File name FULLTEXT01.pdfFile size 8638 kBChecksum SHA-512
9065e8fd2bc6f9618ef22ef39c35f3477674ea0ba6034c8f73e0cf55ad8287bf9e05a322d54ffe6d1a7558ab5a74b6f598769dcbd72fa7f2476454fb97857251
Type fulltextMimetype application/pdf

Other links

Publisher's full textPubMedScopus

Authority records

Buyanbadrakh, BolorBaland, ElisabethPérez, LucíaHolmberg, SandraPuértolas Balint, FabiolaToh, EricWai, Sun NyuntSchröder, BjörnRamstedt, MadeleineZhu, ShaochunMateus, André

Search in DiVA

By author/editor
Buyanbadrakh, BolorBaland, ElisabethLambeck, PaulaPérez, LucíaHolmberg, SandraPuértolas Balint, FabiolaToh, EricWai, Sun NyuntSchröder, BjörnRamstedt, MadeleineZhu, ShaochunMateus, André
By organisation
Department of ChemistryDepartment of Molecular Biology (Faculty of Medicine)Molecular Infection Medicine Sweden (MIMS)Umeå Centre for Microbial Research (UCMR)
In the same journal
Nature Communications
MicrobiologyMicrobiology in the Medical Area

Search outside of DiVA

GoogleGoogle Scholar
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 349 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf