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More than stoichiometry: the molecular composition of inorganic and organic substrates controls ammonium regeneration by bacteria
Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences.
Aquatic Ecosystems and Global Change Research Unit, French National, Institute for Agriculture, Food, and Environment (INRAE), 50 Avenue de Verdun 33612, Cestas Cedex, France.ORCID iD: 0000-0003-0107-9374
2023 (English)In: Aquatic Ecology, ISSN 1386-2588, E-ISSN 1573-5125, Vol. 57, p. 543-555Article in journal (Refereed) Published
Abstract [en]

The mineralization of nitrogen (N) and especially the regeneration of ammonium are critical processes performed by bacteria in aquatic ecosystems. Quantifying these processes is complicated because bacteria simultaneously consume and produce ammonium. Here we use experimental data on the effects of the molecular composition of the supplied substrates, combined with a classical stoichiometric model of ammonium regeneration, to demonstrate how the quantification of these processes can be improved. We manipulated a batch culture experiment with an isolated bacterial community by adding three different types of N substrates: dissolved inorganic nitrogen (DIN, nitrate), dissolved organic nitrogen (DON, amino acid) and a mixture of DIN and DON. With such experiment set-up, the ammonium regeneration per se could be easily tracked without using complicated methods (e.g. isotope dilution). We compared the experimental data with the predictions of Goldman et al’ model (1987) as well as with a revised version, using the measured consumption carbon:nitrogen ratio (C:N ratio), rather than an estimated consumption ratio. We found that, for all substrates, and in particular, mixed substrates where C and N are partially dissociated between different molecules, estimates of ammonium regeneration rates can be improved by measuring the actual consumption C: N ratio.

Place, publisher, year, edition, pages
Springer Science+Business Media B.V., 2023. Vol. 57, p. 543-555
Keywords [en]
organic nitrogen, inorganic nitrogen, bacterial stoichiometry, bacterial ammonium regeneration, bacterial net mineralization
National Category
Earth and Related Environmental Sciences
Research subject
environmental science
Identifiers
URN: urn:nbn:se:umu:diva-167424DOI: 10.1007/s10452-023-10028-8ISI: 000980854200001Scopus ID: 2-s2.0-85158154789OAI: oai:DiVA.org:umu-167424DiVA, id: diva2:1387015
Funder
Knut and Alice Wallenberg Foundation
Note

Originally included in thesis in manuscript form.

Available from: 2020-01-20 Created: 2020-01-20 Last updated: 2025-02-07Bibliographically approved
In thesis
1. Consequences of consumer-resource stoichiometric imbalance in planktonic food webs
Open this publication in new window or tab >>Consequences of consumer-resource stoichiometric imbalance in planktonic food webs
2020 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Resource imbalance between consumers and their resources can come from inadequate resource quantity or quality. The ecological stoichiometry theory focuses on understanding the consequences of imbalance in elemental composition.  In this thesis, I have used both resource quality (e.g., inorganic vs organic forms of nutrients) and resource quantity (e.g., terrestrial and freshwater nutrient loading to natural coastal systems) to address the consequences of consumer-resource imbalance in planktonic food webs. First, I provided a framework that summarizes how the stoichiometric imbalance is transferred from one biological level to another. The framework highlights the importance of the distribution of elements among different chemical forms and the distribution of elements among connected ecosystems. The framework then served as a guideline for the empirical work of my thesis.  Second, I studied the response of bacterial community mineralization to the relative availability of different forms of nitrogen (inorganic vs. organic form) in a batch culture experiment. The study shows that different forms of nitrogen can significantly influence the growth of bacteria. More importantly, my results show that it is crucial to measure the actual bacterial carbon to nitrogen consumption ratio, rather than use classical theoretical models, to be able to make an accurate prediction of bacterial ammonium regeneration. Third, I tested the effect of different forms of nitrogen on microplankton food web dynamics in a microcosm experiment. I found that differences between nitrogen forms have a strong impact on food web dynamics that is channeled by the bacteria-phytoplankton interaction at the base of the food web. The whole microplankton food web benefits from organic forms of nitrogen as a result of increased mutualistic interactions between bacteria and phytoplankton. Hence, the form of nitrogen is an important factor to be considered in microplanktonic food web dynamics, at least on the short-term. In the final part of this thesis, I explored resource quality and quantity effects on the stoichiometric response of a natural coastal ecosystem in a field study. I expected that the relative availability of inorganic or organic forms of carbon, nitrogen and phosphorus in our sampling bays may affect organismal elemental composition both temporally and spatially. The results indicate that the stoichiometry among seston size fractions and zooplankton varied more through time than in space. However, zooplankton stoichiometry was relatively stable among species within specific months. Overall, the concentration of dissolved organic carbon and dissolved organic nitrogen in the water column were the major explanatory variables for the seston stoichiometry. In summary, this thesis uses multiple systems to elucidate how the form and input of nutrients shape the plankton food web dynamics and its stoichiometric responses.

Place, publisher, year, edition, pages
Umeå: Umeå University, 2020. p. 36
National Category
Earth and Related Environmental Sciences
Research subject
environmental science
Identifiers
urn:nbn:se:umu:diva-167427 (URN)978-91-7855-182-8 (ISBN)978-91-7855-183-5 (ISBN)
Public defence
2020-02-28, Lilla Hörsalen, KBC, Umeå, 14:12 (English)
Opponent
Supervisors
Available from: 2020-02-07 Created: 2020-02-03 Last updated: 2025-02-07Bibliographically approved

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Guo, JunwenCherif, Mehdi

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