Umeå universitets logga

umu.sePublikationer
Ändra sökning
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
The Eucalyptus Genome Integrative Explorer: an online resource for systems genetics in forest tree species
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Institutionen för fysiologisk botanik. Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Umeå Plant Science Centre (UPSC).ORCID-id: 0000-0003-1589-9138
Visa övriga samt affilieringar
2020 (Engelska)Ingår i: The Plant Journal, ISSN 0960-7412, E-ISSN 1365-313XArtikel i tidskrift (Övrigt vetenskapligt) Accepted
Ort, förlag, år, upplaga, sidor
John Wiley & Sons, 2020.
Nationell ämneskategori
Annan data- och informationsvetenskap Annan biologi
Identifikatorer
URN: urn:nbn:se:umu:diva-170113OAI: oai:DiVA.org:umu-170113DiVA, id: diva2:1426553
Tillgänglig från: 2020-04-27 Skapad: 2020-04-27 Senast uppdaterad: 2023-05-02
Ingår i avhandling
1. Human-computer interaction principles for developing web-based genomics resources
Öppna denna publikation i ny flik eller fönster >>Human-computer interaction principles for developing web-based genomics resources
2020 (Engelska)Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
Alternativ titel[sv]
Mänskliga-datorinteraktion principer för utveckling av webb-baserade resurser för genomik
Abstract [en]

Genomics projects, including genome sequencing, transcriptomics, genome-wide association mapping and epigenetics assays, producevast quantities of data. Extracting the required information from such complex datasets is a significant challenge and even where software tools do exist, these are often not intuitive or designed fornon-specialist users. This dissertation details how I have applied design principles from the field of Human-Computer Interaction (HCI) to the development of intuitive bioinformatics web-based resources for exploring genomics data. In the first part of the thesis I detail the development of a specialised genomics resource that enables non specialists who lack bioinformatics skills to access, explore and extract new knowledge from a variety of genomics data types. These tools were developed in collaboration with wet lab biologists and bioinformaticians who represent typical end-users. The tools developed have been integrated within the PlantGenIE (Plant Genome IntegrativeExplorer) web resource, which has been established as a platform for exploring genomics data for Populus, conifer, Eucalyptus and Arabidopsisgenomics data. Even though the ability to collect, store and manage data is increasing faster due to new technologies and science, our ability to understand it remains constant. To help address this, in the second part of this dissertation I focus on the usability enhancement of tools based on the HCI and User Experience (UX) practices. To achieve this, I utilised visualisation techniques and design principles in the design process for the improvement of the PlantGenIEUser Interface (UI), and applied usability methods to evaluate the UX of PlantGenIE tools. These results were then used to inform adaptations and fine-tuning of those. I show that utilisation of these research methods and practices with the development life cycle represents a framework for designing usable bioinformatics tools. Wider-scale use of these methods by future designers and developers will enable the creation of more usable bioinformatics resources.

Ort, förlag, år, upplaga, sidor
Umeå: Umeå Universitet, 2020. s. 62
Nationell ämneskategori
Bioinformatik och systembiologi Genetik Människa-datorinteraktion (interaktionsdesign)
Identifikatorer
urn:nbn:se:umu:diva-170109 (URN)978-91-7855-284-9 (ISBN)978-91-7855-285-6 (ISBN)
Disputation
2020-06-11, Stora hörsalen (KB3B1), KBC-huset, Umeå, 09:00 (Engelska)
Opponent
Handledare
Tillgänglig från: 2020-05-20 Skapad: 2020-04-27 Senast uppdaterad: 2020-05-25Bibliografiskt granskad

Open Access i DiVA

Fulltext saknas i DiVA

Person

Mannapperuma, ChanakaMähler, NiklasDelhomme, NicolasStreet, Nathaniel

Sök vidare i DiVA

Av författaren/redaktören
Mannapperuma, ChanakaMähler, NiklasDelhomme, NicolasStreet, Nathaniel
Av organisationen
Institutionen för fysiologisk botanikUmeå Plant Science Centre (UPSC)
I samma tidskrift
The Plant Journal
Annan data- och informationsvetenskapAnnan biologi

Sök vidare utanför DiVA

GoogleGoogle Scholar

urn-nbn

Altmetricpoäng

urn-nbn
Totalt: 663 träffar
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf