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Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes
Laboratory of Plant Functional Genomics, School of Applied BioSciences, Kyungpook National University, Daegu, Republic of Korea.ORCID iD: 0000-0002-7072-451x
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2018 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 8, article id 771Article in journal (Refereed) Published
Abstract [en]

TFs are important proteins regulating plant responses during environmental stresses. These insults typically induce changes in cellular redox tone driven in part by promoting the production of reactive nitrogen species (RNS). The main source of these RNS is nitric oxide (NO), which serves as a signalling molecule, eliciting defence and resistance responses. To understand how these signalling molecules regulate key biological processes, we performed a large scale S-nitrosocysteine (CySNO)-mediated RNA-seq analysis. The DEGs were analysed to identify potential regulatory TFs. We found a total of 673 (up- and down-regulated) TFs representing a broad range of TF families. GO-enrichment and MapMan analysis suggests that more than 98% of TFs were mapped to the Arabidopsis thaliana genome and classified into pathways like hormone signalling, protein degradation, development, biotic and abiotic stress, etc. A functional analysis of three randomly selected TFs, DDF1RAP2.6, and AtMYB48 identified a regulatory role in plant growth and immunity. Loss-of-function mutations within DDF1 and RAP2.6 showed compromised basal defence and effector triggered immunity, suggesting their positive role in two major plant defence systems. Together, these results imply an important data representing NO-responsive TFs that will help in exploring the core mechanisms involved in biological processes in plants.

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Nature Publishing Group, 2018. Vol. 8, article id 771
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Plant Biotechnology
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URN: urn:nbn:se:umu:diva-176699DOI: 10.1038/s41598-017-18850-5ISI: 000422637200030PubMedID: 29335449OAI: oai:DiVA.org:umu-176699DiVA, id: diva2:1500952
Available from: 2020-11-14 Created: 2020-11-14 Last updated: 2022-09-15Bibliographically approved

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Imran, Qari Muhammad

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