We present observations from five Mars Express (MEX) orbits in September 2016 while the spacecraft passed through the Martian induced magnetotail at altitudes up to 3,500 km. On these orbits, the Mars Advanced Radar for Subsurface and Ionosphere Sounding (MARSIS) instrument was operated in Active Ionospheric Sounding (AIS) mode at much higher altitude than normal, acting as a local sounder and detecting cold plasma structures in this region. In this paper we combine MARSIS tail measurements with solar wind data from the Solar Wind Ion Analyzer (SWIA) instrument and the Magnetometer (MAG) from Mars Atmosphere and Volatile EvolutioN (MAVEN) in order to investigate possible factors affecting plasma transport from the dayside and through the terminator. MARSIS observed structured cold ionospheric plasma along its trajectory, at all altitudes and solar zenith angles (SZAs). Isolated regions of cold plasma were also observed on each orbit as the spacecraft crossed the terminator, even at high altitudes. We conclude that the variability of plasma seen in the tail results from a multifactorial transport process, the development of which cannot be attributed to a sole parameter influencing it, despite the availability of simultaneous high quality solar wind measurements.