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Lake sedimentary dna research on past terrestrial and aquatic biodiversity: Overview and recommendations
Umeå University, Faculty of Science and Technology, Department of Ecology and Environmental Sciences. Department of Marine Biology, Institut de Ciències del Mar, CSIC, Barcelona, Spain.ORCID iD: 0000-0001-9143-7061
Department Environment, Dynamics and Territories of the Mountains (EDYTEM), UMR 5204, CNRS, University Savoie Mont Blanc, Le Bourget du Lac, France.
Department of Geosciences, UiT the Arctic University of Norway, Tromsø, Norway; Section for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Department of Ecology and Genetics, the Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
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2021 (English)In: Quaternary, E-ISSN 2571-550X, Vol. 4, no 1, article id 6Article, review/survey (Refereed) Published
Abstract [en]

The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.

Place, publisher, year, edition, pages
MDPI, 2021. Vol. 4, no 1, article id 6
Keywords [en]
Biodiversity, Lake sediments, Metabarcoding, Metagenomics, Paleoecology, Paleogenetics, Paleogenomics, Paleolimnology, Sedimentary ancient DNA, Sedimentary DNA
National Category
Geochemistry
Identifiers
URN: urn:nbn:se:umu:diva-182945DOI: 10.3390/quat4010006ISI: 000633093700001Scopus ID: 2-s2.0-85104594727OAI: oai:DiVA.org:umu-182945DiVA, id: diva2:1553831
Available from: 2021-05-11 Created: 2021-05-11 Last updated: 2024-02-13Bibliographically approved

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Capo, EricBigler, ChristianBindler, RichardOlajos, FredrikRydberg, Johanvan Woerkom, Anne

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Capo, EricRouillard, AlexandraBigler, ChristianBindler, RichardEnglund, GöranOlajos, FredrikRydberg, Johanvan Woerkom, Anne
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Quaternary
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