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Multi-decoder Networks with Multi-denoising Inputs for Tumor Segmentation
Umeå University, Faculty of Medicine, Department of Radiation Sciences.ORCID iD: 0000-0002-2391-1419
Umeå University, Faculty of Medicine, Department of Radiation Sciences, Radiation Physics.ORCID iD: 0000-0002-8971-9788
Umeå University, Faculty of Science and Technology, Department of Computing Science.ORCID iD: 0000-0001-7119-7646
2021 (English)In: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries / [ed] Alessandro Crimi, Spyridon Bakas, Springer, 2021, p. 412-423Conference paper, Published paper (Refereed)
Abstract [en]

Automatic segmentation of brain glioma from multimodal MRI scans plays a key role in clinical trials and practice. Unfortunately, manual segmentation is very challenging, time-consuming, costly, and often inaccurate despite human expertise due to the high variance and high uncertainty in the human annotations. In the present work, we develop an end-to-end deep-learning-based segmentation method using a multi-decoder architecture by jointly learning three separate sub-problems using a partly shared encoder. We also propose to apply smoothing methods to the input images to generate denoised versions as additional inputs to the network. The validation performance indicates an improvement when using the proposed method. The proposed method was ranked 2nd in the task of Quantification of Uncertainty in Segmentation in the Brain Tumors in Multimodal Magnetic Resonance Imaging Challenge 2020.

Place, publisher, year, edition, pages
Springer, 2021. p. 412-423
Series
Lecture Notes in Computer Science, ISSN 0302-9743, E-ISSN 1611-3349 ; 12658
Keywords [en]
Brain tumor segmentation, Deep learning, Ensemble, Medical imaging, MRI, Uncertainty estimation
National Category
Medical Imaging Computer graphics and computer vision
Identifiers
URN: urn:nbn:se:umu:diva-186225DOI: 10.1007/978-3-030-72084-1_37ISI: 000892566900037Scopus ID: 2-s2.0-85106168970ISBN: 9783030720834 (print)OAI: oai:DiVA.org:umu-186225DiVA, id: diva2:1580886
Conference
6th International MICCAI Brainlesion Workshop, BrainLes 2020 Held in Conjunction with 23rd Medical Image Computing for Computer Assisted Intervention Conference, MICCAI 2020, Lima, Peru, October 4, 2020
Funder
Cancerforskningsfonden i NorrlandRegion VästerbottenVinnova
Note

Also part of the Image Processing, Computer Vision, Pattern Recognition, and Graphics book sub series (LNIP, volume 12658)

Available from: 2021-07-16 Created: 2021-07-16 Last updated: 2025-02-09Bibliographically approved

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Vu, Minh HoangNyholm, TufveLöfstedt, Tommy

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Vu, Minh HoangNyholm, TufveLöfstedt, Tommy
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