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A New Class of Cell Wall-Recycling L,D-Carboxypeptidase Determines β-Lactam Susceptibility and Morphogenesis in Acinetobacter baumannii
Department of Biology, Northeastern University, MA, Boston, United States.
Umeå universitet, Medicinska fakulteten, Molekylär Infektionsmedicin, Sverige (MIMS). Umeå universitet, Medicinska fakulteten, Umeå Centre for Microbial Research (UCMR). Umeå universitet, Medicinska fakulteten, Institutionen för molekylärbiologi (Medicinska fakulteten).
Department of Biology, Northeastern University, MA, Boston, United States.
Umeå universitet, Medicinska fakulteten, Molekylär Infektionsmedicin, Sverige (MIMS). Umeå universitet, Medicinska fakulteten, Umeå Centre for Microbial Research (UCMR). Umeå universitet, Medicinska fakulteten, Institutionen för molekylärbiologi (Medicinska fakulteten).ORCID-id: 0000-0001-5995-718x
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2021 (Engelska)Ingår i: mBio, ISSN 2161-2129, E-ISSN 2150-7511, Vol. 12, nr 6, artikel-id e0278621Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

The hospital-acquired pathogen Acinetobacter baumannii possesses a complex cell envelope that is key to its multidrug resistance and virulence. The bacterium, however, lacks many canonical enzymes that build the envelope in model organisms. Instead, A. baumannii contains a number of poorly annotated proteins that may allow alternative mechanisms of envelope biogenesis. We demonstrated previously that one of these unusual proteins, ElsL, is required for maintaining a characteristic short rod shape and for withstanding antibiotics that attack the septal cell wall. Curiously, ElsL is composed of a leaderless YkuD-family domain usually found in secreted, cell wall-modifying L,D-transpeptidases (LDTs). Here, we show that, rather than being an LDT, ElsL is actually a new class of cytoplasmic L,D-carboxypeptidase (LDC) that provides a critical step in cell wall recycling previously thought to be missing from A. baumannii. Absence of ElsL impairs cell wall integrity, morphology, and intrinsic resistance due to buildup of murein tetrapeptide precursors, toxicity of which is bypassed by preventing muropeptide recycling. Multiple pathways in the cell become sites of vulnerability when ElsL is inactivated, including L,D-cross-link formation, cell division, and outer membrane lipid homoeostasis, reflecting its pleiotropic influence on envelope physiology. We thus reveal a novel class of cell wall-recycling LDC critical to growth and homeostasis of A. baumannii and likely many other bacteria.

Ort, förlag, år, upplaga, sidor
American Society for Microbiology , 2021. Vol. 12, nr 6, artikel-id e0278621
Nyckelord [en]
Acinetobacter, Antibiotic resistance, Cell wall recycling, L, D-carboxypeptidase, Morphology, Peptidoglycan
Nationell ämneskategori
Mikrobiologi inom det medicinska området
Identifikatorer
URN: urn:nbn:se:umu:diva-191076DOI: 10.1128/mBio.02786-21ISI: 000744177300002Scopus ID: 2-s2.0-85121972769OAI: oai:DiVA.org:umu-191076DiVA, id: diva2:1625788
Tillgänglig från: 2022-01-10 Skapad: 2022-01-10 Senast uppdaterad: 2024-11-06Bibliografiskt granskad
Ingår i avhandling
1. Studies on cell wall biosynthesis and remodeling in Acinetobacter baumannii
Öppna denna publikation i ny flik eller fönster >>Studies on cell wall biosynthesis and remodeling in Acinetobacter baumannii
2024 (Engelska)Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
Alternativ titel[sv]
Studier om cellväggens biosyntes och ombyggnad hos Acinetobacter baumannii
Abstract [en]

The bacterial cell envelope is a complex and dynamic structure with essential functions in fitness and adaptation. In Gram-negative bacteria, the envelope is composed of an inner (IM) and an outer membrane (OM) that create a space in between called periplasm, where the peptidoglycan (PG) cell wall is located. This PG forms a net-like structure that surrounds the bacteria, determining its shape, counteracting osmotic pressure, and serving as a scaffold for proteins. PG synthesis starts in the cytoplasm, where the membrane-associated PG precursor lipid-II is made through a series of reactions. Lipid-II is then flipped into the periplasm, where it is polymerized to build the mature the sacculus. In rod-shaped bacteria such as Escherichia coli, two multiprotein complexes are responsible for PG synthesis: the divisome (septal synthesis) and the elongasome (axial synthesis). Since the discovery of penicillin, PG synthesis has been the focus of research due to its importance as therapeutic target. In this thesis, we explore various mechanisms that contribute to envelope homeostasis in the pathogen Acinetobacter baumannii. In the first chapter, we examine the remarkable ability of A. baumannii to survive without the elongasome. We phenotypically characterized deletion mutants of the genes encoding the individual components of the elongasome, followed by long-term evolution experiments to identify genetic cues that could explain the non-essentiality of the elongasome in this bacterium. The second chapter of the thesis focuses on the study of ElsL, an uncharacterized protein that allowed A. baumannii to keep its rod shape and withstand antibiotics that attack the septum of the cell wall. Although ElsL possesses a YkuD-like domain, which is usually found in periplasmic L,D-transpeptidases, we showed that ElsL is actually a cytoplasmic L,D-carboxypeptidase involved in PG recycling. Absence of ElsL produces a toxic build-up of murein tetrapeptide precursors that negatively affects cell wall integrity. Additionally, inactivation of ElsL perturbs other pathways such as outer membrane lipid homeostasis or L,D-crosslink formation. In the third chapter we focus on the crosstalk between the OM and the PG in A. baumannii. This bacterium is an outstanding model to study OM contribution in envelope stability due to its ability to lose its lipooligosacharide (LOS) layer. Using transposon sequencing we found that the elongasome and the PG recycling enzyme ElsL are essential in LOS-deficient A. baumannii strains. We further demonstrated that high PBP1A levels impacted negatively on the elongasome function, thus preventing these strains to lose their LOS. In the final chapter of the thesis, we studied how A. baumannii employs its type VI secretion system to kill Gram-positive and Gram-negative bacteria. This is dependent on Tse4, a bifunctional enzyme possessing lytic transglycosylase and endopeptidase activities. Additionally, we showed that A. baumannii also secretes D-lysine, which gets incorporated into its PG and increased the pH of the environment to enhance Tse4 activity.

Ort, förlag, år, upplaga, sidor
Umeå: Umeå University, 2024. s. 34
Serie
Umeå University medical dissertations, ISSN 0346-6612 ; 2333
Nyckelord
Peptidoglycan, lipopolysaccharide, bacterial cell wall, antibiotics, Acinetobacter baumannii, elongasome
Nationell ämneskategori
Mikrobiologi inom det medicinska området Mikrobiologi
Identifikatorer
urn:nbn:se:umu:diva-231493 (URN)978-91-8070-548-6 (ISBN)978-91-8070-549-3 (ISBN)
Disputation
2024-12-13, Major Groove, Building 6L, NUS, Umeå, 09:00 (Engelska)
Opponent
Handledare
Tillgänglig från: 2024-11-22 Skapad: 2024-11-06 Senast uppdaterad: 2024-11-07Bibliografiskt granskad

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Molekylär Infektionsmedicin, Sverige (MIMS)Umeå Centre for Microbial Research (UCMR)Institutionen för molekylärbiologi (Medicinska fakulteten)
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