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pH induced changes in Raman, UV-Vis absorbance, and fluorescence spectra of dipicolinic acid (DPA)
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Institutionen för fysik.
Umeå universitet, Teknisk-naturvetenskapliga fakulteten, Institutionen för fysik.
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2022 (Engelska)Ingår i: Spectrochimica Acta Part A - Molecular and Biomolecular Spectroscopy, ISSN 1386-1425, E-ISSN 1873-3557, Vol. 271, artikel-id 120869Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Dipicolinic acid (DPA) is an essential component for the protection of DNA in bacterial endospores and is often used as a biomarker for spore detection. Depending upon the pH of the solution, DPA exists in different ionic forms. Therefore, it is important to understand how these ionic forms influence spectroscopic response. In this work, we characterize Raman and absorption spectra of DPA in a pH range of 2.0–10.5. We show that the ring breathing mode Raman peak of DPA shifts from 1003 cm−1 to 1017 cm−1 and then to 1000 cm−1 as pH increases from 2 to 5. The relative peak intensities related to the different ionic forms of DPA are used to experimentally derive the pKa values (2.3 and 4.8). We observe using UV–vis spectroscopy that the changes in the absorption spectrum of DPA as a function of pH correlate with the changes observed in Raman spectroscopy, and the same pKa values are verified. Lastly, using fluorescence spectroscopy and exciting a DPA solution at between 210–330 nm, we observe a shift in fluorescence emission from 375 nm to 425 nm between pH 2 and pH 6 when exciting at 320 nm. Our work shows that the different spectral responses from the three ionic forms of DPA may have to be taken into account in, e.g., spectral analysis and for detection applications.

Ort, förlag, år, upplaga, sidor
Elsevier, 2022. Vol. 271, artikel-id 120869
Nyckelord [en]
Bacterial spores, DPA, Biomarker, Raman spectra, UV–vis absorption spectra, Fluorescence spectra
Nationell ämneskategori
Biofysik Annan fysik Oorganisk kemi
Identifikatorer
URN: urn:nbn:se:umu:diva-191504DOI: 10.1016/j.saa.2022.120869ISI: 000751812400019PubMedID: 35065519Scopus ID: 2-s2.0-85122995846OAI: oai:DiVA.org:umu-191504DiVA, id: diva2:1629910
Forskningsfinansiär
Vetenskapsrådet, 2019–04016Kempestiftelserna, JCK-1916.2Tillgänglig från: 2022-01-19 Skapad: 2022-01-19 Senast uppdaterad: 2025-02-20Bibliografiskt granskad
Ingår i avhandling
1. KNOW YOUR ENEMY: Characterizing Pathogenic Biomaterials Using Laser Tweezers
Öppna denna publikation i ny flik eller fönster >>KNOW YOUR ENEMY: Characterizing Pathogenic Biomaterials Using Laser Tweezers
2022 (Engelska)Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
Abstract [en]

Diseases caused by pathogenic agents such as bacteria and viruses result in devastating costs on personal and societal levels. However, it is not just the emergence of new diseases that is problematic. Antibiotic resistance among bacteria makes uncomplicated infections difficult and lethal. Resilient disease-causing spores spread in hospitals, the food industry, and water supplies requiring effective detection and disinfection methods. Further, we face complex neurological diseases where no effective treatment or diagnostic methods exist. Thus, we must increase our fundamental understanding of these diseases to develop effective diagnostic, detection, disinfection, and treatment methods.

Classically, the methods used for detecting and studying the underlying mechanics of pathogenic agents work on a large scale, measuring the average macroscopic behavior and properties of these pathogens. However, just as with humans, the average behavior is not always representative of individual behavior. Therefore, it is also essential to investigate the characteristics of these pathogens on a single cell or particle level. 

This thesis develops and applies optical techniques to characterize pathogenic biomaterial on a single cell or particle level. At the heart of all these studies is our Optical Tweezers (OT) instrument. OT are a tool that allows us to reach into the microscopic world and interact with it. Finally, by combining OT with other experimental techniques, we can chemically characterize biomaterials and develop assays that mimic different biological settings. Using these tools, we investigate bacterial adhesion, disinfection, and detection of pathogenic spores and proteins.

Hopefully, the insights of these studies can lessen the burden on society caused by diseases by helping others develop effective treatment, diagnostic, detection, and disinfection methods in the future. 

Ort, förlag, år, upplaga, sidor
Umeå: Umeå universitet, 2022. s. 73
Nyckelord
Optical Tweezers, Laser Tweezers, Raman Spectroscopy, Bacterial Adhesion, Biophysics, Pili, Bacterial Spores, Endospores, Oocysts, Cryptosporidium, Optics
Nationell ämneskategori
Biofysik Atom- och molekylfysik och optik
Forskningsämne
biologi; fysik
Identifikatorer
urn:nbn:se:umu:diva-192471 (URN)978-91-7855-726-4 (ISBN)978-91-7855-727-1 (ISBN)
Disputation
2022-03-11, NAT.D.410, Naturvetarhuset, Umeå, 09:00 (Engelska)
Opponent
Handledare
Tillgänglig från: 2022-02-18 Skapad: 2022-02-14 Senast uppdaterad: 2025-02-20Bibliografiskt granskad

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Malyshev, DmitryÖberg, RasmusDahlberg, TobiasAndersson, Magnus

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Malyshev, DmitryÖberg, RasmusDahlberg, TobiasAndersson, Magnus
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Spectrochimica Acta Part A - Molecular and Biomolecular Spectroscopy
BiofysikAnnan fysikOorganisk kemi

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