Umeå universitets logga

umu.sePublikationer
Ändra sökning
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity
Department of Biological Sciences, University of Bergen, Bergen, Norway.
Umeå universitet, Medicinska fakulteten, Umeå centrum för molekylär medicin (UCMM). School of Life Sciences, College of Science, Health and Engineering, La Trobe University, VIC, Melbourne, Australia.ORCID-id: 0000-0003-0232-1812
Institute for Modeling Collaboration and Innovation (IMCI), University of Idaho, ID, Moscow, United States.
Institute for Modeling Collaboration and Innovation (IMCI), University of Idaho, ID, Moscow, United States.
Visa övriga samt affilieringar
2022 (Engelska)Ingår i: Frontiers in Neuroanatomy, E-ISSN 1662-5129, Vol. 16, artikel-id 945344Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Salmonids are ideal models as many species follow a distinct developmental program from demersal eggs and a large yolk sac to hatching at an advanced developmental stage. Further, these economically important teleosts inhabit both marine- and freshwaters and experience diverse light environments during their life histories. At a genome level, salmonids have undergone a salmonid-specific fourth whole genome duplication event (Ss4R) compared to other teleosts that are already more genetically diverse compared to many non-teleost vertebrates. Thus, salmonids display phenotypically plastic visual systems that appear to be closely related to their anadromous migration patterns. This is most likely due to a complex interplay between their larger, more gene-rich genomes and broad spectrally enriched habitats; however, the molecular basis and functional consequences for such diversity is not fully understood. This study used advances in genome sequencing to identify the repertoire and genome organization of visual opsin genes (those primarily expressed in retinal photoreceptors) from six different salmonids [Atlantic salmon (Salmo salar), brown trout (Salmo trutta), Chinook salmon (Oncorhynchus tshawytcha), coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), and sockeye salmon (Oncorhynchus nerka)] compared to the northern pike (Esox lucius), a closely related non-salmonid species. Results identified multiple orthologues for all five visual opsin classes, except for presence of a single short-wavelength-sensitive-2 opsin gene. Several visual opsin genes were not retained after the Ss4R duplication event, which is consistent with the concept of salmonid rediploidization. Developmentally, transcriptomic analyzes of Atlantic salmon revealed differential expression within each opsin class, with two of the long-wavelength-sensitive opsins not being expressed before first feeding. Also, early opsin expression in the retina was located centrally, expanding dorsally and ventrally as eye development progressed, with rod opsin being the dominant visual opsin post-hatching. Modeling by spectral tuning analysis and atomistic molecular simulation, predicted the greatest variation in the spectral peak of absorbance to be within the Rh2 class, with a ∼40 nm difference in λmax values between the four medium-wavelength-sensitive photopigments. Overall, it appears that opsin duplication and expression, and their respective spectral tuning profiles, evolved to maximize specialist color vision throughout an anadromous lifecycle, with some visual opsin genes being lost to tailor marine-based vision.

Ort, förlag, år, upplaga, sidor
Frontiers Media S.A., 2022. Vol. 16, artikel-id 945344
Nyckelord [en]
atomistic molecular simulation, eye, photoreception, RNA in situ hybridization, RNA sequencing, salmonid, visual opsin
Nationell ämneskategori
Zoologi Evolutionsbiologi
Identifikatorer
URN: urn:nbn:se:umu:diva-198333DOI: 10.3389/fnana.2022.945344ISI: 000832800900001Scopus ID: 2-s2.0-85134699424OAI: oai:DiVA.org:umu-198333DiVA, id: diva2:1685284
Forskningsfinansiär
Norges forskningsråd, 254894Norges forskningsråd, 315106NIH (National Institutes of Health), P30 GM103324Tillgänglig från: 2022-08-02 Skapad: 2022-08-02 Senast uppdaterad: 2024-01-15Bibliografiskt granskad

Open Access i DiVA

fulltext(4446 kB)168 nedladdningar
Filinformation
Filnamn FULLTEXT01.pdfFilstorlek 4446 kBChecksumma SHA-512
24783036fd0fadb28b480fe64d2f42e863bdd0b92ccfe61eabf75212130f38eb527ffd5a65ca01ca5e4e771849af4ed0e6e8b40b56a1f78e01173081ac3657cd
Typ fulltextMimetyp application/pdf

Övriga länkar

Förlagets fulltextScopus

Person

Davies, Wayne Iwan Lee

Sök vidare i DiVA

Av författaren/redaktören
Davies, Wayne Iwan Lee
Av organisationen
Umeå centrum för molekylär medicin (UCMM)
I samma tidskrift
Frontiers in Neuroanatomy
ZoologiEvolutionsbiologi

Sök vidare utanför DiVA

GoogleGoogle Scholar
Totalt: 168 nedladdningar
Antalet nedladdningar är summan av nedladdningar för alla fulltexter. Det kan inkludera t.ex tidigare versioner som nu inte längre är tillgängliga.

doi
urn-nbn

Altmetricpoäng

doi
urn-nbn
Totalt: 377 träffar
RefereraExporteraLänk till posten
Permanent länk

Direktlänk
Referera
Referensformat
  • apa
  • ieee
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf