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Enhanced polymerase activity permits efficient synthesis by cancer-Associated DNA polymerase variants at low dNTP levels
Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, NE, Omaha, United States.
Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, NE, Omaha, United States.
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.ORCID iD: 0000-0002-5494-5486
Umeå University, Faculty of Medicine, Department of Medical Biochemistry and Biophysics.
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2022 (English)In: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 50, no 14, p. 8023-8040Article in journal (Refereed) Published
Abstract [en]

Amino acid substitutions in the exonuclease domain of DNA polymerase (Pol) cause ultramutated tumors. Studies in model organisms suggested pathogenic mechanisms distinct from a simple loss of exonuclease. These mechanisms remain unclear for most recurrent Pol mutations. Particularly, the highly prevalent V411L variant remained a long-standing puzzle with no detectable mutator effect in yeast despite the unequivocal association with ultramutation in cancers. Using purified four-subunit yeast Pol, we assessed the consequences of substitutions mimicking human V411L, S459F, F367S, L424V and D275V. While the effects on exonuclease activity vary widely, all common cancer-Associated variants have increased DNA polymerase activity. Notably, the analog of Pol-V411L is among the strongest polymerases, and structural analysis suggests defective polymerase-To-exonuclease site switching. We further show that the V411L analog produces a robust mutator phenotype in strains that lack mismatch repair, indicating a high rate of replication errors. Lastly, unlike wild-Type and exonuclease-dead Pol, hyperactive variants efficiently synthesize DNA at low dNTP concentrations. We propose that this characteristic could promote cancer cell survival and preferential participation of mutator polymerases in replication during metabolic stress. Our results support the notion that polymerase fitness, rather than low fidelity alone, is an important determinant of variant pathogenicity.

Place, publisher, year, edition, pages
Oxford University Press, 2022. Vol. 50, no 14, p. 8023-8040
National Category
Cell and Molecular Biology
Identifiers
URN: urn:nbn:se:umu:diva-199009DOI: 10.1093/nar/gkac602ISI: 000823814600001PubMedID: 35822874Scopus ID: 2-s2.0-85136314031OAI: oai:DiVA.org:umu-199009DiVA, id: diva2:1692564
Funder
Swedish Cancer SocietySwedish Research Council, 2018-07152Vinnova, 2018-04969Swedish Research Council Formas, 2019-02496Available from: 2022-09-02 Created: 2022-09-02 Last updated: 2024-07-02Bibliographically approved

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Markgren, Joel G.Parkash, VimalJohansson, Erik

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