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Topological screen identifies hundreds of Cp190- and CTCF-dependent Drosophila chromatin insulator elements
Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
Umeå University, Faculty of Medicine, Department of Molecular Biology (Faculty of Medicine).
Department of Computer Science, National Chengchi University, Taipei City, Taiwan.
Institute of Human Genetics, UMR9002 CNRS, Montpellier, France.
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2023 (English)In: Science Advances, E-ISSN 2375-2548, Vol. 9, no 5, article id eade0090Article in journal (Refereed) Published
Abstract [en]

Drosophila insulators were the first DNA elements found to regulate gene expression by delimiting chromatin contacts. We still do not know how many of them exist and what impact they have on the Drosophila genome folding. Contrary to vertebrates, there is no evidence that fly insulators block cohesin-mediated chromatin loop extrusion. Therefore, their mechanism of action remains uncertain. To bridge these gaps, we mapped chromatin contacts in Drosophila cells lacking the key insulator proteins CTCF and Cp190. With this approach, we found hundreds of insulator elements. Their study indicates that Drosophila insulators play a minor role in the overall genome folding but affect chromatin contacts locally at many loci. Our observations argue that Cp190 promotes cobinding of other insulator proteins and that the model, where Drosophila insulators block chromatin contacts by forming loops, needs revision. Our insulator catalog provides an important resource to study mechanisms of genome folding.

Place, publisher, year, edition, pages
2023. Vol. 9, no 5, article id eade0090
National Category
Developmental Biology Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
URN: urn:nbn:se:umu:diva-204742DOI: 10.1126/sciadv.ade0090ISI: 000960602300013PubMedID: 36735780Scopus ID: 2-s2.0-85147457402OAI: oai:DiVA.org:umu-204742DiVA, id: diva2:1738500
Funder
Knut and Alice Wallenberg Foundation, 2014.0018Swedish Research Council, 2021-04435Erik Philip-Sörensens stiftelseCarl Tryggers foundation , 12:434Available from: 2023-02-22 Created: 2023-02-22 Last updated: 2023-09-05Bibliographically approved

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Kahn, Tatyana G.Savitsky, MikhailSchwartz, Yuri B.

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